F12332

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F12332

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F12332

Determination of introduced cDNA(s)

RAFL09-16-L17 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-16-L17 - Resource: pda02094

full reading [+] show sequence

GAAGAGCAGA GTCATTCTTA ACCATAGAGA CAGAAGAGAT AAGAATCATA 
ACAACAACAA CACCAATCAT TACACACAGG TTGATACTAT GGAGAGAAAG 
CCTCTTGAGG TTGAGCCATC TACTACGACG ACTAACACCG ATGTGGTCGA 
TTCTTTCGAG GAAGAGCAGA GAAAAATCGT TTATAGAGGA TGGAAAGTCA 
TGCCTTTTAT CATTGGTAAT GAGACATTTG AGAAGCTTGG GATCATAGGG 
ACATTATCAA ACCTTCTTGT GTACCTAACT TCTGTATTCA ACCTTAAGAG 
CTACACAGCT GCAACTATCA TCAATGCCTT TAGTGGTACA ATCAATTTCG 
GGACTTTTAT TGCTGCCTTT CTTTGCGACA CTTACTTTGG TCGCTACAAG 
ACTCTCAGTG TCGCTGTCAT CGCTTGTTTT CTGGGATCGT TTGTGATACT 
ACTTACTGCT GCAATTCCGT CGTTGCACCC CGTTGCTTGC GGAAACAAAA 
TCTCGTGCGA AGGGCCAAGT GTGGGACAGA TACTGTTTCT GCTCATGGGT 
TTAGGCTTTC TTGTGGTAGG CGCTGGTGGT ATCAGACCGT GTAATTTAGC 
GTTTGGTGCT GATCAGTTCA ACCCCAAATC CGAATCAGGA AAGAAAGGGA 
TCAACAGTTT CTTCAACTGG TATTTCTTCA CTTTCACGTT CGCGCAGATC 
ATCTCGCTCA CAGCAGTTGT GTATATCCAG TCAAATGTGA GTTGGACAAT 
CGGTTTGATC ATTCCGGTGG CTCTTATGTT CTTGGCGTGT GTGATTTTCT 
TTGCTGGCGA TAGATTGTAT GTAAAAGTGA AAGCCTCGGG TAGTCCATTG 
GCTGGTATTG CTCGTGTTAT AGCAGCCGCG ATCAAGAAAC GAGGTTTGAA 
GCCGGTTAAG CAGCCTTGGG TCAATCTTTA CAACCATATC CCGTCTAACT 
ATGCAAATAC TACTCTAAAA TACACCGACC AGTTCAGATT TCTAGACAAA 
GCAGCAATTA TGACCCCCGA GGAGAAGTTG AACTCCGATG GAACGGCTTC 
CGATCCATGG AAACTATGCA CGTTGCAGCA AGTGGAAGAA GTGAAATGCA 
TTGTAAGAGT GATTCCAATC TGGTTTGCAT CCACGATATA CTACCTTGCA 
ATAACTATAC AAATGACTTA TCCGGTCTTC CAAGCGCTCC AGAGCGACCG 
ACGATTAGGT TCTGGTGGCT TCAGGATTCC TGCGGCCACC TATGTAGTGT 
TCTTGATGAC TGGCATGACA GTTTTCATCA TATTCTACGA CCGTGTACTT 
GTCCCGTCGC TCAGAAGAGT GACCGGGTTA GAAACCGGTA TATCACTCTT 
ACAAAGAATC GGAGCTGGGT TTACATTTGC GATAATGAGT TTATTAGTTT 
CCGGGTTTAT AGAGGAAAGG AGAAGAAACT TTGCATTGAC CAAACCGACA 
CTCGGGATGG CGCCTCGGAC AGGAGAAATC TCATCAATGT CAGCGTTGTG 
GCTGATTCCG CAGCTTACAC TTGCAGGCAT AGCAGAAGCT TTTGCTGCCA 
TTGGACAAAT GGAGTTTTAC TACAAGCAGT TTCCTGAAAA CATGAAGAGC 
TTCGCGGGTT CTATCTTTTA TGTCGGTGCA GGGGTTTCGA GCTACCTCGC 
TAGCTTCTTG ATATCAACTG TTCATCGAAC AACCGCGCAT TCACCTTCAG 
GGAATTGGTT AGCTGAGGAT CTGAACAAAG CGAAATTGGA TTACTTCTAC 
TTCATGCTCA CAGGACTCAT GGTTGTTAAC ATGGCTTACT TCTTGTTGAT 
GGCTAGATGG TATAGATACA AAGGAGGTAA TGATGAAGAC ATCACTGAGA 
TTGAGACCAA TGAAGAAGAA ACCAAGCAAC AGCAGCTACA AGACAAGAAC 
TCTGTCTGAT CTGGAAACTT ATATATTTTT GGTATTCTAC TTCAATCTCC 
GTAGTTTTTC TTCACCCGAA ATCAACCTTG TTGTACTTTT ATAGATTAAT 
TGAAGAAGAA AATCACTTCA TCTTTGTAGA CATGTATTGT AAAATAAGTT 
TTTTGTTGCC AAAAAAAAAA AAAAAA

Gene models with high sequence identity

AT3G47960.1 [+] show detail - Major facilitator superfamily protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Oligopeptide transporter	8.2e-55
superfamily	Major facilitator superfamily, general substrate transporter	3.7e-22
HMMPanther	NITRATE TRANSPORTER (NRT1)	0
HMMPanther	OLIGOPEPTIDE TRANSPORTER-RELATED	0

See the detailed result >

AT3G47960.1

Model type: Protein coding
Short Description: Major facilitator superfamily protein
Computational Description: Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT5G62680.1); Has 3941 Blast hits to 3750 proteins in 534 species: Archae - 0; Bacteria - 697; Metazoa - 584; Fungi - 378; Plants - 2186; Viruses - 0; Other Eukaryotes - 96 (source: NCBI BLink).
Link: InterPro Scan - TAIR