F12415

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F12415

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Original: F12415

Determination of introduced cDNA(s)

  • RAFL09-31-D21 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-31-D21 - Resource: pda05837

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-31-D21 - full reading 
    TGGTCCGTGT GACCGTGTCT ACGACGTTGA AATCGAAATT ACCACAATGT 
    CCTCGCCGGA GCGTGCTCTC TTGAATCTAT TGACGGACAT CGCTCTCTCC 
    TTCGACGGCG CAATCCTCGG ACTGACTTTA GCTGTTAGCG CCGTCGGTTC 
    TGCTCTCAAG TATGCTTCTA CCAACGCCGC GTTGAAGAAG ATCAAAGATG 
    CACCCGAAGT CTCCATTTCC GACCTCCGAT CACTGCTTCC GGCTTCTGAA 
    GACAAATCAG AGACTAACGA TAACAGGAAG AGCAATGATC AGCGAATCGT 
    TGTGGTTCGC GGAGTCGTCA AACCGAAAAT TTCCGGTGAT GAGGGTTACA 
    AGAACAACAA CGTGTTAATC TCTCCGGAGA CTGGAGATAA AGCTCTTATC 
    ATTCAGAGAA CGCAAACTTA TGTGTATAGT GGATGGAAGA GATTGTTTCA 
    GTCCACTGGT CACCGGTTTA TGTTGGAGAG ATCATTGCGC AAACACGGTG 
    CTGATTTTAC GAGAACGGTC CCATTTGTCA TTGTTGGAAA GGATCAGCAA 
    TCGAACTCTA GTTTTGTCGC TGTTAACATG GATGGCTCAA GGCAACCTCT 
    TCCGCTTACC ACTGTGTATA ATCGCTTGCA GCCTATTAAT TCTTCGTTTC 
    TTCAAGCCTT TTTGTACCCC GATTATCCTG TTGGTCTGCT TGATATAGAG 
    AAGATTTTAC CACCTGGGAA AGATATAACA GCTGTTGGCA TCTACAGTTT 
    TAATAATGGA GTTCCTGAAA TCAAATCGTG CCAAGATCTT CCTTATTTCT 
    TATCAGAGAT GACCAAGGAC AAGATGATTG AGGACCTTAT GGAACAGACC 
    AACTTTATAT TCTTGGGCAG CGTTATCTTG GGCATTGTGT CTGTTGGCAT 
    CCTTAGCTAT GCTGCTGTCA GGACCTGGAA TAAATGGAAA CAATGGAACC 
    ATCAGAGAGA ACTGCCACAG AGACCGAACG ATTCTGTGGT CGATGATGAA 
    CCCGAAGATG CAGATGAAAT CCCAGATGGA GAATTGTGTG TGATCTGCGT 
    GTCAAGAAGG AGAGTACCTG CGTTTATTCC CTGTGGACAT GTAGTATGTT 
    GCAGGCGATG TGCTTCAACC GTGGAACGAG AGTTAAACCC TAAGTGTCCA 
    GTTTGTCTTC AGAGCATTAG GGGATCTATG CGTGTATATT ACTCTTAGTG 
    ACCCTGAATC TTCTCTCATT GTATGTAATA GGGTAATGCA ATTTGTACTC 
    TCAGAGAATC GGAAGTTAAC AAAATAGTTT GACG

    Gene models with high sequence identity

    1. AT1G54150.1 [+] show detail - E3 Ubiquitin ligase family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily RING/U-box 5.7e-11
    HMMSmart Zinc finger, RING-type 0.0075
    HMMPfam E3 Ubiquitin ligase 4.5e-34
    HMMPanther UNCHARACTERIZED RING ZINC FINGER-CONTAINING P 2e-134
    ProfileScan Zinc finger, RING-type 10.409

    See the detailed result >

    AT1G54150.1

    Model type
    Protein coding
    Short Description
    E3 Ubiquitin ligase family protein
    Computational Description
    E3 Ubiquitin ligase family protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), E3 Ubiquitin ligase (InterPro:IPR022170); BEST Arabidopsis thaliana protein match is: E3 Ubiquitin ligase family protein (TAIR:AT1G59560.1); Has 1960 Blast hits to 1959 proteins in 225 species: Archae - 0; Bacteria - 0; Metazoa - 1182; Fungi - 34; Plants - 350; Viruses - 140; Other Eukaryotes - 254 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR