F12513

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F12513

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Seed::deep brown

Original: F12513

Determination of introduced cDNA(s)

RAFL06-07-F15 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-07-F15 - Resource: pda02833

full reading [+] show sequence

CTCTTCTTCT TCTTCTTCAT CTTTTTTTTT TAACAGATCT GGTGGAAATT 
TTATCTTTTG ACCCCACCAC TGGATCTCTC TATATACACA TTCATCTGAG 
TAATAGAGTA AAAACGAAAC ACAAGAAGCA ATTATGAAGA ATTGTGAGAG 
ATTTGCTAAT CTCGCTCTCG CAGGTTTGAC ATTGGCACCA CTCGTTGTGA 
GAGTAAATCC AAATTTGAAT GTTATTCTCA CAGCATGTAT CACTGTTTAT 
GTGGGTTGCT TTCGTTCGGT CAAGGATACT CCTCCAACGG AGACGATGTC 
AAAAGAACAT GCCATGCGTT TCCCATTGGT TGGGAGTGCT ATGCTTCTCT 
CACTTTTCTT ATTGTTCAAG TTTCTCTCAA AGGACTTGGT TAATGCTGTG 
CTAACAGCTT ACTTCTTTGT TCTTGGGATT GTCGCTCTTT CAGCGACATT 
GTTACCAGCC ATCAGAAGAT TTTTACCAAA TCCTTGGAAT GACAATCTTA 
TCGTCTGGCG TTTTCCTTAT TTCAAGTCTT TGGAGGTAGA GTTCACAAAG 
TCCCAAGTTG TTGCGGGAAT CCCTGGAACA TTCTTCTGTG CGTGGTATGC 
GTGGAAAAAA CATTGGCTGG CTAACAATAT CCTCGGCCTT TCCTTCTGCA 
TTCAGGGAAT TGAGATGCTC TCTCTCGGAT CATTCAAGAC TGGTGCCATC 
CTTTTGGCAG GACTATTTTT CTATGATATC TTCTGGGTTT TCTTTACTCC 
AGTTATGGTT AGTGTTGCCA AATCCTTCGA TGCTCCAATT AAGCTCTTAT 
TCCCTACGGG TGATGCTCTA AGACCCTATT CTATGCTTGG TCTTGGTGAC 
ATTGTCATTC CGGGTATTTT CGTTGCACTA GCTCTAAGAT TTGATGTGTC 
AAGACGTAGA CAACCACAAT ACTTCACAAG TGCATTTATC GGATACGCTG 
TTGGTGTGAT CCTCACGATT GTAGTCATGA ACTGGTTTCA AGCAGCACAG 
CCTGCTTTGT TATACATTGT CCCAGCCGTA ATTGGGTTCT TGGCTTCTCA 
CTGCATTTGG AACGGTGACA TCAAACCGTT GTTGGCGTTT GATGAATCAA 
AGACAGAGGA AGCAACGACT GATGAATCAA AGACTAGTGA GGAGGTTAAT 
AAAGCTCATG ATGAATGAGG AAAAATCGAG AAAGAAGGGC AGAGGAGAAA 
TATATACACA TAAATGTGTC TTAATATATG GAACAAGAAG GAAAACAATT 
TTGTTTCCAA ATGATCATCA ATCAGTCCCT TCTAACCCCT TTTTTGTTTT 
TTTAGATTTT CAAACTTTCT TTTGGCCAAG ACTTGTGTAA GTTACTATAA 
GTTACAACAA ATTTTCTTTG ACTAAT

Gene models with high sequence identity

AT2G03120.1 [+] show detail - signal peptide peptidase
E-value: 0; Score: 99.93

InterPro Scan Digest

Program	Description	E-value
HMMPanther	SIGNAL PEPTIDE PEPTIDASE	1.7e-105
HMMPanther	Peptidase A22B, signal peptide peptidase	1.7e-105
HMMSmart	Peptidase A22, presenilin signal peptide	8.8e-100
HMMPfam	Peptidase A22B, signal peptide peptidase	1.3e-86

See the detailed result >

AT2G03120.1

Model type: Protein coding
Short Description: signal peptide peptidase
Curator Summary: homologous to Signal Peptide Peptidases (SPP), required for pollen development and pollen germination. No homozygotes could be recovered from a T-DNA insertion mutant.
Computational Description: signal peptide peptidase (SPP); FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: pollen germination, pollen development; LOCATED IN: endoplasmic reticulum, endoplasmic reticulum membrane; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase A22, presenilin signal peptide (InterPro:IPR006639), Peptidase A22B, signal peptide peptidase (InterPro:IPR007369); BEST Arabidopsis thaliana protein match is: SIGNAL PEPTIDE PEPTIDASE-LIKE 1 (TAIR:AT4G33410.1); Has 989 Blast hits to 959 proteins in 196 species: Archae - 4; Bacteria - 0; Metazoa - 468; Fungi - 136; Plants - 243; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).
Link: InterPro Scan - TAIR