F12618

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F12618

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • epinastic (PATO:0000945)
    (Cauline leaf::Shape::epinastic)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • present in fewer numbers in organism (PATO:0001997)
    (Stem::Number::few)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F12618

Determination of introduced cDNA(s)

  • RAFL06-81-C08 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-81-C08 - Resource: pda03797

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-81-C08 - full reading
    ACAGAGTTTC GGCTCCTCCG TTGTGTTTCA GGACGACGCA AAGGGGAAAA 
    AAAATTGAAT TCTTTCTCTC CAAGCGAAAC TAGGGTTTCG AAAGTCTCTG
    TCTCATCAAA GCTTCGAAAA GAAAGTGATT GCATTAAGAG AAACATTGGG
    ATAAAAGATG AGCTTTACTC AGGCTAATTG TTTTCGACCA TCCTACTATC
    CTGCAAGGAT AACACGACCA AATTGCATCT CCAGTGTACC TATTAGGTCT
    TCAGTACGCT TTGATCACTT CCCGCGTACC TCGTTTACTC TTCGAGCTAC
    TGCTGCAGTG TCTACTCAGT TTTCGCCTCT TCTTGATCAT CGCCGTCGTT
    TACCTACTGG GAAATCGAAA CAAAGTTCTG CTGTGTGCTT ATTTGGTGGG
    AAAGATAAAC CTGATGGTAG TGATGAGATA TCGCCATGGA AAGCAATAGA
    GAAAGCTATG GGGAAGAAAT CGGTTGAAGA TATGTTGCGA GAGCAGATAC
    AGAAGAAAGA CTTTTATGAT ACTGACAGTG GCGGCAACAT GCCTCCACGT
    GGAGGAGGCA GTGGTGGCGG TGGTGGAAAT GGTGAGGAGC GTCCTGAAGG
    GTCAGGAGGA GAAGATGGTG GTCTTGCTGG GATCGCAGAT GAAACTTTGC
    AAGTGGTTTT GGCGACCTTA GGCTTCATCT TTTTGTACAC ATACATTATC
    ACTGGGGAGG AATTGGTCAA GCTTGCAAGG GATTACATTA GGTTTCTTAT
    GGGAAGACCT AAGACTGTTC GATTGACCCG AGCCATGGAT AGTTGGAACG
    GATTCTTGGA GAAGATGTCG AGGCAAAGAG TGTATGATGA GTATTGGCTA
    GAAAAGGCGA TCATCAACAC ACCAACCTGG TATGATAGCC CTGAGAAGTA
    CAGACGTGTT ATCAAGGCTT ATGTTGATTC AAATTCTGAT GAAGCTTATG
    TGGAATCAAA TTCTGATGAG GTATCTTACT AGGTTAGGAA CAGGAAGAGA
    TCCATAATAA CAATTGAGTT TTTTTTCTTA GTGTTTGAAA TTTAGAATCA
    GTTTCTTTGA ATTGGATTTA TGTTCGTACA TTTGTATGGA ATTGGTTTAT
    TTATACACGA TGAACATTCT CGAGGGAAAA AAAAAAAAAA AA

    Gene models with high sequence identity

    1. AT2G43630.1 [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: ch...
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    See the detailed result >

    AT2G43630.1

    Model type
    Protein coding
    Computational Description
    FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast, nucleus, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT3G59640.2); Has 67 Blast hits to 67 proteins in 20 species: Archae - 0; Bacteria - 4; Metazoa - 9; Fungi - 1; Plants - 49; Viruses - 2; Other Eukaryotes - 2 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR