F12638

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F12638

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F12638

Determination of introduced cDNA(s)

  • RAFL09-10-F06 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-10-F06 - Resource: pda05342

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-10-F06 - full reading 
    CTTCTTCTTC TGCTTAAGCT TTCCTTCTCA GGCAGACCCA CTTGCTTGAA 
    ACTAGCTCGG AACGATAACG ACAAAATTCG CCACCATAAA CCCTATTTTT 
    AATCTCCGAC TCTGTCGTCA CTTCTCCTTC AAGCTGGGTA GATTAAGTTC 
    GCTTATGGCC ATGGGGGTTT CTCTTACTTC CCACAATAAC CCTCTTCTTC 
    GCCACTTATC TCCTTCCTCT TCCTGGGTTT CTCGTTCCTC CTCTCGCCTC 
    TCTTCTTCTC CACTCCCTTC CTTCCTCTTT CCTTGCCGTC GAACCCTTCT 
    TCAAAGGAAA CTAGCTTCCA CTGATGGAAA TGTCGGTTAT TGTACTACTA 
    CAGTTTGTCA GGGATTTCAG CATTCGGTTC ATCAACGGTC TTCTGTTGTG 
    TTTAACGGAG AGTGGGAACT TCGATCGGAA TCTAACAAGG TAAGGATGGT 
    TCCTAAGATT ATCAAGGTTG GAAATCAGAC GGAGGTAGCC GAAACTCATC 
    AAGTTCCTGG AACTGTAAGT GCTTGGAGGG AAGAAGCTAA TAAGCTTAGA 
    GAAAGAAATG GTCAAATTGC TAGAAACCTT GATGACAATG GTTATTTCAA 
    TGGCTCTGTC CCAATTATAT CTAGTGCTCC GTCTTATGAA ACCTCTCAGA 
    AGATTGATTA TGAGTTCAAG CCCAGAGGGA CCACTAGGTC CACTACTGCT 
    ACACTCAATA AGGAATTGAT TGGCATTACC CAATCTGAAC CTGTTGTGTC 
    ATTGCCAAGG AAGGGTTTAG ATGTTGGGGA TAATATGGAT GTAAATCCTA 
    AAGGAGAGGG AATACAGAGA CCTCTTATAA GCGATAAGTC TTCTGGTACC 
    GCAAATGGAA ACAAGAATAC TGTTGCCATT TCCAAAGTGG AGAGAAGCAC 
    TGAACCTTCG AATGTCCGTG AAAACCTTGG GAAAATATAT GACAAGGTTC 
    TCATTGTTGA TAATGTGCAA GCTGCGAAGG ATACCGTGGC TAAGCTCGTG 
    AATCAGTTTA GGAATCATGT CCATTCCTGT GATACAGAGG TGTCCGGGAT 
    TGAGGTTAAG GAAGAAACGC CTGTCGACCA CGGTGAATTA ATATGTTTCA 
    GTATTTACTG TGGGCCAGAA GCAGATTTTG GGAATGGAAA ATCGTGCATC 
    TGGGTTGATG TTCTTGGTGA AAATGGCAGG GAGGTGTTGG CCGAGTTTAA 
    ACCATATTTT GAAGACTCGT TCATCAGAAA AGTCTGGCAC AACTACAGTT 
    TCGATAGCCA CATCATTAGG AACCATGGAA TTGAGATTTC TGGTTTTCAT 
    GCCGACACTA TGCACATGGC ACGATTATGG GATTCTGCAC GGCGGATAAA 
    AGGTGGTTAT TCGCTTGAAG CGCTTACAAG TGACCCAAAA GTTCTTGGGG 
    GCACACAGAC AAAGGAGGAA GCTGAGTTCC TTGGTAAAAT TTCGATGAAG 
    ACTATTTTTG GCAAACGGAA ACTGAAAAAA GATGGATCTG AAGGGAAAAT 
    CGTTGTCATT CCCCCTGTTG AAGAGCTTCA GCGAGAAGAT CGAGAGGCTT 
    GGATTTCATA CTCTGCCTTG GATGCGATAA GCACACTAAA GCTTTACGAG 
    AGCATGACAA AGAAACTGCA ATTGATGGAT TGGCATCTTG ATGGAAAGCC 
    AGTTTTAGGA AGGACAATGT TGGATTTTTA CCATGAGTTC TGGCGACCCT 
    TTGGTGAACT TCTTGTAAAA ATGGAAGCAG AAGGGATACT TGTAGATAGA 
    GAGTATCTTG CTGAGATAGA GAAAGTAGCC AAAGCGGAAC AACAAGTTGC 
    TGGTAGTAGG TTTCGTAATT GGGCATCTAA GTATTGCCCC GATGCGAAGT 
    ATATGAATAT TGGCAGTGAC ACACAATTGC GTCAGCTCTT TTTTGGTGGC 
    ATTTCCAACA GTCATGACGA GGTGCTTCCA GTTGAAAAGC TCTTCAAAGT 
    CCCCAATATT GATAAGGTTA TTGAAGAAGG CAAAAAAACA CCGACGAAGT 
    TTCGAAACAT CAAACTGCAT AGGATAAGTG ATAGCCCACT GTCAACGGAA 
    AATTTTACTG CCAGTGGTTG GCCCTCTGTA GGTGGGGATG TTTTGAAAGA 
    GTTAGCTGGG AAAGTTTCTG CTGAATACGA CTTTATGGAT GATGTCTCAG 
    ATATTTCTCT GGAAGAAGTT GTTGAGGATG ATGATGTAGA AACATCAGAA 
    ACACAAAAGT CCAAGACAGA TGATGAAACC GACACATCTG CTTATGGAAC 
    AGCATATGTT GCATTTGGAG GGGGTGAAAG GGGAAAGGAG GCATGTCATG 
    CTATTGCCTC ATTATGTGAA GTTTGCTCTA TAGACTCTTT GATCTCAAAT 
    TTTATTCTTC CGTTACAGGG AAGTAATGTA TCAGGCAAAG ATGGTCGCGT 
    CCATTGCTCC CTTAATATCA ATACAGAAAC TGGGCGCTTA TCAGCTAGAA 
    GGCCAAATTT GCAGAACCAA CCTGCATTGG AGAAGGATCG GTACAAGATT 
    CGTAAGGCCT TTGTAGCATC GCCTGGAAAT ACACTTGTTG TGGCTGATTA 
    TGGGCAGTTG GAACTTAGAA TTCTGGCACA TCTTACTGGT TGTAAAAGCA 
    TGATGGAAGC TTTTAAAGCA GGCGGAGATT TCCACTCAAG GACAGCCATG 
    AATATGTATC CACATGTTCG TGAAGCTGTA GAAAATGGGC AAGTGATCCT 
    TGAATGGCAT CCAGAACCTG GGGAAGACAA GCCACCTGTG CCGTTGTTAA 
    AGGATGCCTT TGGTTCAGAG AGAAGAAAAG CCAAGATGCT TAACTTTTCA 
    ATTGCGTATG GGAAAACCGC GGTCGGGCTT TCTAGAGATT GGAAGGTCTC 
    CACTAAAGAA GCTCAGGAAA CAGTCGATCT CTGGTACAAT GACAGGCAAG 
    AAGTAAGGAA ATGGCAAGAA ATGCGTAAGA AAGAAGCTAT AGAAGATGGG 
    TATGTACTCA CTTTACTAGG AAGGTCTCGT AGATTTCCGG CGTCAAAGTC 
    ACGTGCTCAG AGAAATCATA TCCAAAGAGC AGCAATCAAC ACTCCAGTCC 
    AGGGAAGTGC AGCTGATGTT GCCATGTGTG CAATGTTGGA AATATCGATA 
    AATCAACAGT TGAAGAAGCT TGGTTGGAGA TTGCTTCTAC AGATTCATGA 
    TGAAGTAATC TTGGAAGGAC CAATTGAATC AGCGGAGATC GCAAAGGACA 
    TAGTTGTGGA CTGTATGTCT AAGCCCTTTA ACGGAAGGAA TATTCTCTCA 
    GTCGATTTAT CTGTTGATGC AAAATGTGCT CAAAACTGGT ATGCTGCCAA 
    ATAGAGAAGC TTAGAGACCG GCCGTAGTTG AAGGAAGCGA TTTTTTGGGT 
    ATATTAAGGT TTGGGTTTTG TAAATGTTAG AAAGCCTTGA GAACGTTGAG 
    CTGTGTAAAT TGTTTTCTCA AACTCTAATC TTCTAACTTG ACGATGTTTG 
    AATGT

    Gene models with high sequence identity

    1. AT1G50840.1 [+] show detail - polymerase gamma 2
      E-value: 0; Score: 99.91

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 7.3e-20
    Gene3D no description 2.8e-38
    superfamily DNA/RNA polymerases 4.2e-96
    superfamily Polynucleotidyl transferase, ribonuclease H fold 5.6e-28
    HMMPanther DNA POLYMERASE I 5.8e-217
    HMMSmart DNA-directed DNA polymerase, family A, palm domain 2.2e-53
    FPrintScan DNA polymerase A domain 5.6e-28
    FPrintScan DNA polymerase A domain 5.6e-28
    FPrintScan DNA polymerase A domain 5.6e-28
    FPrintScan DNA polymerase A domain 5.6e-28
    FPrintScan DNA polymerase A domain 5.6e-28
    FPrintScan DNA polymerase A domain 5.6e-28
    HMMPfam DNA-directed DNA polymerase, family A, palm domain 4.2e-60
    HMMPfam 3'-5' exonuclease 1.8e-10

    See the detailed result >

    AT1G50840.1

    Model type
    Protein coding
    Short Description
    polymerase gamma 2
    Curator Summary
    DNA Polymerase gamma2. Dual targeting to mitochondria and plastids due to alternative translation initiation.
    Computational Description
    polymerase gamma 2 (POLGAMMA2); FUNCTIONS IN: DNA binding, DNA-directed DNA polymerase activity; INVOLVED IN: DNA replication, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-directed DNA polymerase, family A, palm domain (InterPro:IPR001098), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), DNA polymerase A domain (InterPro:IPR002298), 3'-5' exonuclease (InterPro:IPR002562); BEST Arabidopsis thaliana protein match is: polymerase gamma 1 (TAIR:AT3G20540.1); Has 11974 Blast hits to 10011 proteins in 2572 species: Archae - 0; Bacteria - 6712; Metazoa - 149; Fungi - 0; Plants - 122; Viruses - 286; Other Eukaryotes - 4705 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR