F12644

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F12644

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F12644

Determination of introduced cDNA(s)

  • RAFL06-16-F11 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-16-F11 - Resource: pdz87606

    5 prime EST [+] show sequence

    Nucleotide sequence: RAFL06-16-F11 - 5 prime EST 
    GAAAATTGTT AAGTTCGTGT CCGCGAGATC AGAGTTTGTG TCCGGTTATA 
    CGATTCGTCG GTACCAAAAC CCTCCGAGAA GTGTTTCAGG TGGGAAGGTA 
    TCTCTGTCTA CACGATGTCC GGCGAGGAAG AAGCCACCGT GAGGGAGCCA 
    CTAGATCTGA TTAGGCTGAG TCTCGACGAG AGAATCTATG TCAAGCTCCG 
    GTCAGACCGC GAACTTCGCG GCAAGCTTCA CGCGTTTGAT CAGCATTTGA 
    ATATGATTCT GGGTGATGTT GAAGAAACTA TCACTACAGT AGAAATCGAT 
    GACGAGACAT ATGAAGAGAT TGTTCGGACT ACAAAGCGGA CGATTGAGTT 
    TCTATTCGTG AGAGGAGATG GAGTGATATT GGTGTCTCCA CCGCTGAGGA 
    CAGCAGCCTG AGTTCAAACT CAAATCTTTT GTGTCCTCTT TTCGTAAGGG 
    GAATTTGTGA CTATTCTTGT ATTTAGTCAC TTCTTGTCTT AACTAAAACA 
    AGCTTGAAGA AGCTACTTTG CTTAAATTTC CAATGCTTTT CAGAT

    Gene models with high sequence identity

    1. AT1G76860.1 [+] show detail - Small nuclear ribonucleoprotein family protein
      E-value: 0; Score: 100.00

    3 prime EST [+] show sequence

    Nucleotide sequence: RAFL06-16-F11 - 3 prime EST 
    CATCTGAAAA GCATTGGAAA TTTAAGCAAA GTAGCTTCTT CAAGCTTGTT 
    TTAGTTAAGA CAAGAAGTGA CTAAATACAA GAATAGTCAC AAATTCATCC 
    TTACGAAAAG AGGACACAAA AGATTTGAGT TTGAACTCAG GCTGCTGTCC 
    TCAGCGGTGG AGACACCAAT ATCACTCCAT CTCCTCTCAC GAATAGAAAC 
    TCAATCGTCC GCTTTGTAGT CCGAACAATC TCTTCATATG TCTCGTCATC 
    GATTTCTACT GTAGTGATAG TTTCTTCAAC ATCACCCAGA ATCATATTCA 
    AATGCTGATC AAACGCGTGA AGCTTGCCGC GAAGTTCGCG GTCTGACCGG 
    AGCTTGACAT A

    Gene models with high sequence identity

    1. AT1G76860.1 [+] show detail - Small nuclear ribonucleoprotein family protein
      E-value: 0; Score: 99.44

    AT1G76860.1

    Model type
    Protein coding
    Short Description
    Small nuclear ribonucleoprotein family protein
    Computational Description
    Small nuclear ribonucleoprotein family protein; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT1G21190.1); Has 1289 Blast hits to 1289 proteins in 302 species: Archae - 306; Bacteria - 0; Metazoa - 397; Fungi - 221; Plants - 178; Viruses - 0; Other Eukaryotes - 187 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR