F12837

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F12837

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F12837

Determination of introduced cDNA(s)

RAFL09-21-F11 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-21-F11 - Resource: pda05605

full reading [+] show sequence

AACTCCTCCC ACATTCTCTC CGCCTCTCTC GTTTACAAAT CCCACCTCAA 
AGGTCGACTC TTTATCTCTC TTCTCACCAA CCCAACTTCT CCAATGGCTT 
CTCAGAGTTC AGTCGCCGTC ATTTCCTCCG CCGCCGCCAG AGGTGAATCA 
TTCCCAGATT CAAAGAAACC AATCGGGTCA GTTCGGTTCC AACAACCCCT 
CCGTCTCTCC TTCTCGTACT GTAAGTCAGG GAATATGTCA TCTAGAATCT 
GCGCTATGGC CAAACCAAAT GATGCTGAGA CTCTTTCATC ATCAGTAGAT 
ATGTCACTTA GCCCGCGAGT TCAGTCCTTA AAACCTTCCA AGACTATGGT 
TATAACCGAT CTTGCAGCCA CTCTTGTTCA ATCCGGTGTT CCGGTTATTA 
GACTAGCTGC GGGAGAACCC GATTTCGACA CTCCCAAAGT CGTAGCTGAG 
GCTGGGATCA ACGCGATTCG AGAAGGTTTT ACTAGGTATA CGTTAAATGC 
AGGTATTACA GAACTCAGAG AAGCAATATG TCGAAAGCTA AAAGAGGAGA 
ATGGATTGTC TTATGCGCCT GATCAGATCT TGGTTAGTAA TGGAGCTAAA 
CAAAGTCTCT TACAAGCAGT GCTTGCAGTT TGTTCTCCTG GAGATGAAGT 
TATAATTCCT GCACCGTATT GGGTGAGTTA CACAGAACAG GCGAGATTGG 
CTGATGCAAC GCCCGTGGTT ATTCCTACCA AGATTTCTAA CAATTTTTTG 
TTGGATCCAA AGGATCTTGA GTCTAAATTG ACTGAAAAAT CTAGACTTCT 
TATTCTCTGC TCTCCTTCCA ACCCTACTGG ATCTGTTTAC CCCAAGAGTT 
TGCTCGAAGA GATTGCACGG ATCATTGCTA AGCATCCAAG ACTTCTGGTG 
CTTTCGGATG AAATATATGA ACACATTATT TATGCACCTG CAACACACAC 
AAGCTTTGCT TCTTTGCCTG ACATGTATGA AAGAACTTTG ACAGTAAACG 
GTTTCTCAAA GGCTTTCGCA ATGACGGGTT GGAGGCTTGG ATATCTTGCT 
GGTCCTAAAC ATATTGTGGC AGCTTGCAGT AAATTACAAG GCCAGGTTAG 
TTCAGGAGCT AGTAGCATTG CTCAGAAAGC AGGTGTTGCT GCGCTTGGGT 
TAGGCAAAGC TGGAGGAGAA ACGGTTGCAG AGATGGTTAA AGCTTATAGA 
GAAAGACGAG ATTTCTTGGT TAAAAGCTTA GGTGATATCA AAGGTGTTAA 
GATCTCTGAA CCTCAGGGAG CTTTTTATCT CTTTATTGAC TTCAGTGCTT 
ACTATGGATC AGAAGCTGAA GGTTTTGGTT TGATCAATGA TTCGTCGTCT 
CTTGCACTAT ACTTTCTTGA CAAGTTTCAG GTTGCAATGG TTCCTGGTGA 
TGCTTTTGGA GATGATAGTT GTATCCGAAT ATCTTATGCC ACATCTCTCG 
ACGTTCTTCA AGCAGCTGTT GAGAAGATCA GGAAAGCCCT TGAGCCACTC 
CGTGCCACTG TCTCCGTTTA ACAGTTCGGA CACAGAAATG TGTTTAAGAT 
TGTTTATGAT ATGTTGTAAC TTATTTATCA GCTTTGTCTC CAATCCAATA 
AAAAGTCTTT TTCT

Gene models with high sequence identity

AT2G22250.2 [+] show detail - aspartate aminotransferase
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
Gene3D	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	1.5e-73
superfamily	Pyridoxal phosphate-dependent transferase, major domain	4.5e-117
HMMPfam	Aminotransferase, class I/II	8.1e-74
HMMPanther	ASPARTATE AMINOTRANSFERASE	2.5e-180
HMMPanther	SUBGROUP I AMINOTRANSFERASE RELATED	2.5e-180
PatternScan	Aminotransferases, class-I, pyridoxal-phosphate-binding site	0

See the detailed result >

AT2G22250.2

Model type: Protein coding
Short Description: aspartate aminotransferase
Curator Summary: Encodes a prokaryotic-type plastidic aspartate aminotransferase with glutamate/aspartate-prephenate aminotransferase (PAT) activity.
Computational Description: aspartate aminotransferase (AAT); FUNCTIONS IN: L-aspartate:2-oxoglutarate aminotransferase activity, transferase activity, transferring nitrogenous groups, pyridoxal phosphate binding, catalytic activity; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferases, class-I, pyridoxal-phosphate-binding site (InterPro:IPR004838), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (TAIR:AT1G77670.1); Has 50315 Blast hits to 50311 proteins in 3104 species: Archae - 1094; Bacteria - 34657; Metazoa - 783; Fungi - 895; Plants - 1393; Viruses - 0; Other Eukaryotes - 11493 (source: NCBI BLink).
Link: InterPro Scan - TAIR