F13037

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F13037

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • present in fewer numbers in organism (PATO:0001997)
    (Cauline leaf::Number::few)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F13037

Determination of introduced cDNA(s)

  • RAFL09-48-F10 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-48-F10 - Resource: pda06382

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-48-F10 - full reading 
    GCATAATCGG AGAAATCTCT CTGCCGCCAT ATTCAAAGCA GTTTCCACAC 
    ATTTAATGTG AACACGTTTT CTCACTACCA ACAAAAAAAA ACTCAAATCG 
    GAAAAAAAAA TGTCGGTTCA CGGACGATTT CCGGCGAGTC CACCGATTTC 
    ATTATCTCCG TCGTCTTCTT CCACATCTCC GTCTTCACAG TCACCGTCAA 
    CACCACCTGA TCTAAAGCAA CGAGTCATCG CTTGTCTCAA CAAGCTCGCT 
    GATCGTGACA CTTTAGCTCT CGCTTCCGCT GAGCTTGACT CAATCGCTAG 
    AAACCTTACT CACGATTCCT TCTCTCCGTT TCTTAACTGT ATCCACAACA 
    CTGACTCTTC CGTTAAATCT CCGGTGAGGA AACAGTGCGT TGCTCTTTTA 
    TCGGTTCTTT CTCGTTACCA CGGAGATTCT CTAACACCTC ACCTTGCTAA 
    GATGGTTTCA ACTGTTATTC GCCGTCTCCG AGATCCGGAT TCCTCCGTTC 
    GCTCTGCTTG CGCCGTCGCG ACGGCTGATA TGTCGGCTCA TGTTACGAGG 
    CAGCCTTTTG CTTCCGTCGC GAAGCCGTTG ATTGAGACTT TGATTCAGGA 
    AGGTGATTCG AATCTGCAGA TCGGAGCGGC GTTGTGTTTA GCGGCGTCTG 
    TTGATGCGGC GACGGATCCG GAATCGGAGC AATTGAGAAA ATCGTTGCCT 
    AAGATTGGGA AATTGCTTAA GAGTGATGGT TTTAAGGCTA AAGCTGCGTT 
    GTTGAGTGCC GTCGGGAGTA TAATTACCGC CGGTGGTGCG GGAACTAAAC 
    CGGTTTTGGA TTGGTTAGTT CCGGTTTTGA TTGAGTTTTT GAGCAGTGAG 
    GATTGGGCGG CGAGGAAGTC TGCGGCTGAG GCGTTGGGTA AAGTTGCGAC 
    GGCGGAAGAT TTGGCGTCGC AGTATAAGAA GACTTGCACG ACGGCTCTTG 
    AGAGTAGAAG ATTTGATAAG GTGAAAAGTG TTAGAGAAAC TATGAATAGA 
    GCATTGAATC TGTGGAAGGA AGTTTCAACT GATGATGAAG CTTCTTTATC 
    TCCATCAAGA TCTTCAACAG ATGATGGTAA CATTGGATGC TTTTCCTCTG 
    TCACGAGAAG TTCCACCATT GACGTTGGTT TAAAATCCGC TAGGCCAAAG 
    AAAGTAACGC CTATAATGAA GAGGTCCCCA TCTTTGCCTG TGAATAGATC 
    ATATGCAGCA ACTAGACAAA AAGAAAATCT TCCAAAAAGA AATCAAGGGA 
    ATATGACCAT GTTAGTAGAA GAAGCCTCTA GTGTGGATAA CAAGGGACCA 
    CATTTTACAC CGGTAAAGAA ATCTTCGGAA GAAACAGAAG AGAAGGCTAA 
    CTCAGGGGGA CCAGATATAA TCAAACATAC TATCTCTGAG AAAAGCAGGG 
    AAGATAGTAA AGTATCGAGC TTTGGTGGTT TGAGGTCTGG CTCAAGGGTT 
    GCACCTTGTA GTGACGATGG TGATTCTGTA AAGAATTGTA AAGATGATGT 
    TGAAGAGAGC AAGAAAGATA GTGAGGAACT GTCTTTGATA CGGGAACAGC 
    TTGCTCTGAT TGAGAACCAA CAGTCTAGTC TCTTAGACTT ACTACAGAAA 
    TTCATGGGAA CCTCACAGAG TGGAATTCAG TCTCTGGAGT CTCGTGTAAG 
    CGGTCTAGAG ATGGCGTTGG ATGAAATATC GTGCGATCTG GCGGTTTCAA 
    ACGGGAGAGT TCCTAGGAAT AGTAGTGGCT GCGCAGGAGA CAGTTGTTCC 
    AAACTACCTG GTACAGAGTT CTTAAGTCCC AAGTTCTGGA GAAAAACCGA 
    GGAGAGACCA CGGAACAGAA ACACAGCTAA TGAAATGGCT GCGTACGACC 
    AGGGGATGCG AGAATCAACA GATACGAACA ACGGTCAAAG AGGAGGTTCA 
    GTTTTTCAAA AGAGATCACG AAGAGACCAG TTCCAAGACT GTATGCATAC 
    AACACTACAG AAACCAACCA CCAGATTATC TACTTGAAGC AAAAGTGAAA 
    AGAGTGCACT TTTTGAGAAG AAAGTGATGT GATAATTGAA GCTGACCAGA 
    CACTAACACA AGAAGCTGAA AATGAAAAGC CAAAAAATCC CTCAGATTTG 
    ATGCTTTGCT TCAAACCGCT TGTTTGAATT TTCAAATCTC TCACACATGT 
    ATTAGTAATT TAATCAGCGA GTGAAATAAT AGAGTTTC

    Gene models with high sequence identity

    1. AT1G27210.1 [+] show detail - ARM repeat superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Armadillo-like helical 1.9e-09
    Coil coiled-coil 0
    HMMPfam HEAT 0.0012
    ProfileScan HEAT, type 2 8.859
    superfamily Armadillo-type fold 6.5e-31

    See the detailed result >

    AT1G27210.1

    Model type
    Protein coding
    Short Description
    ARM repeat superfamily protein
    Computational Description
    ARM repeat superfamily protein; FUNCTIONS IN: binding; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), HEAT, type 2 (InterPro:IPR021133), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G59850.1); Has 516 Blast hits to 439 proteins in 115 species: Archae - 2; Bacteria - 40; Metazoa - 93; Fungi - 74; Plants - 195; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR