F13304

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F13304

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F13304

Determination of introduced cDNA(s)

  • RAFL05-14-F20 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-14-F20 - Resource: pda07304

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-14-F20 - full reading 
    TGGAAACACA CAGTTCCGTA GCAGAGTTTT AGTTTTAGCA GAGTTGGTGA 
    AATCAATGGG CCACCAAAAC GCCGCCGTTT CAGAGAATCA AAACCATGAT 
    GACGGCGCTG CGTCGTCGCC GGGATTCAAG CTCGTCGGAT TTTCCAAGTT 
    CGTAAGAAAG AATCCAAAGT CTGATAAATT CAAGGTTAAG CGCTTCCATC 
    ACATCGAGTT CTGGTGCGGC GACGCAACCA ACGTCGCTCG TCGCTTCTCC 
    TGGGGTCTGG GGATGAGATT CTCCGCCAAA TCCGATCTTT CCACCGGAAA 
    CATGGTTCAC GCCTCTTACC TACTCACCTC CGGTGACCTC CGATTCCTTT 
    TCACTGCTCC TTACTCTCCG TCTCTCTCCG CCGGAGAGAT TAAACCGACA 
    ACCACAGCTT CTATCCCAAG TTTCGATCAC GGCTCTTGTC GTTCCTTCTT 
    CTCTTCACAT GGTCTCGGTG TTAGAGCCGT TGCGATTGAA GTAGAAGACG 
    CAGAGTCAGC TTTCTCCATC AGTGTAGCTA ATGGCGCTAT TCCTTCGTCG 
    CCTCCTATCG TCCTCAATGA AGCAGTTACG ATCGCTGAGG TTAAACTATA 
    CGGCGATGTT GTTCTCCGAT ATGTTAGTTA CAAAGCAGAA GATACCGAAA 
    AATCCGAATT CTTGCCAGGG TTCGAGCGTG TAGAGGATGC GTCGTCGTTC 
    CCATTGGATT ATGGTATCCG GCGGCTTGAC CACGCCGTGG GAAACGTTCC 
    TGAGCTTGGT CCGGCTTTAA CTTATGTAGC GGGGTTCACT GGTTTTCACC 
    AATTCGCAGA GTTCACAGCA GACGACGTTG GAACCGCCGA GAGCGGTTTA 
    AATTCAGCGG TCCTGGCTAG CAATGATGAA ATGGTTCTTC TACCGATTAA 
    CGAGCCAGTG CACGGAACAA AGAGGAAGAG TCAGATTCAG ACGTATTTGG 
    AACATAACGA AGGCGCAGGG CTACAACATC TGGCTCTGAT GAGTGAAGAC 
    ATATTCAGGA CCCTGAGAGA GATGAGGAAG AGGAGCAGTA TTGGAGGATT 
    CGACTTCATG CCTTCTCCTC CGCCTACTTA CTACCAGAAT CTCAAGAAAC 
    GGGTCGGCGA CGTGCTCAGC GATGATCAGA TCAAGGAGTG TGAGGAATTA 
    GGGATTCTTG TAGACAGAGA TGATCAAGGG ACGTTGCTTC AAATCTTCAC 
    AAAACCACTA GGTGACAGGC CGACGATATT TATAGAGATA ATCCAGAGAG 
    TAGGATGCAT GATGAAAGAT GAGGAAGGGA AGGCTTACCA GAGTGGAGGA 
    TGTGGTGGTT TTGGCAAAGG CAATTTCTCT GAGCTCTTCA AGTCCATTGA 
    AGAATACGAA AAGACTCTTG AAGCCAAACA GTTAGTGGGA TGAACAAGAA 
    GAAGAACCAA CTAAAGGATT GTGTAATTAA TGTAAAACTG TTTTATCTTA 
    TCAAAACAAT GTTATACAAC ATCTCATTTA AAAACGAGAT CAAT

    Gene models with high sequence identity

    1. AT1G06570.1 [+] show detail - phytoene desaturation 1
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 6.1e-79
    Gene3D no description 1.4e-73
    HMMPanther 4-hydroxyphenylpyruvate dioxygenase 3.5e-154
    HMMPfam Glyoxalase/bleomycin resistance protein/dioxygenase 9.3e-06
    superfamily Glyoxalase/Bleomycin resistance protein/Dihyd 3e-123
    HMMTigr 4-hydroxyphenylpyruvate dioxygenase 6.8e-163

    See the detailed result >

    AT1G06570.1

    Model type
    Protein coding
    Short Description
    phytoene desaturation 1
    Curator Summary
    Mutation of the PDS1 locus disrupts the activity of p-hydroxyphenylpyruvate dioxygenase (HPPDase), the first committed step in the synthesis of both plastoquinone and tocopherols in plants.
    Computational Description
    phytoene desaturation 1 (PDS1); CONTAINS InterPro DOMAIN/s: 4-hydroxyphenylpyruvate dioxygenase (InterPro:IPR005956), Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360); Has 2414 Blast hits to 2412 proteins in 817 species: Archae - 3; Bacteria - 1671; Metazoa - 206; Fungi - 158; Plants - 88; Viruses - 0; Other Eukaryotes - 288 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR