F13423

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased width (PATO:0000599) (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F13423

Determination of introduced cDNA(s)

RAFL09-39-G14 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-39-G14 - Resource: pda06211

full reading [+] show sequence

ACACACACAC TTTCTCATCT TCTTTCTACA AATGGGTTTC CAAAGATCTA 
TCTCTTCTTC TTCTGCATTA AAATGGCTTG GATTTGTAAC AGCGGTTTGG 
GTTCAATCCA TCTCCGGCAA CAACTACACT TTTTCAAACT ACTCCGGTGC 
TCTTAAGTCT CTCATGAATC TCAACCAGCT CGAGCTCAAC AACCTCTCTG 
TCGCTAAAGA CGTCGGAAAA GCCTTTGGGA TCCTGGCTGG CCTTGCCTCT 
GACCGTCTTC CCACTCCGGT CATCCTCCTT ATTGGTTGCT TTGAAGGTCT 
TCTTGGTTAT GGTGTACAAT GGCTCGTTGT TAGCCGCACC ATCCAACCAA 
TCCCTTATTG GCAGATGTGT ATATTCCTCT GTATGGGAGG GAACAGCACA 
ACGTGGATGA ACACGGCGGT TCTAGTGACT TGCATACGCA ATTTTCGACG 
AAACCGTGGT CCGGTCTCCG GGATATTGAA AGGATATGTC GGTTTAAGCA 
CAGCTATATT CACTGATCTC TGTACTGCTC TGTTCTCAAA CGATCCGGCG 
TCGTTTTTGG TTTTACTAGC CGTGGTGCCT TTTGCCGTAT GTCTCACGGC 
GGTTTTCTTC CTCCGTGAGA TCCCACCAGC ATCTTCCGCA GCTGAGGAGA 
ACGAAGAGAC TCGTTACTTT ACCATATTCA ACATTGTGGC CGTTGTTGTC 
GCCGTGTATC TTCAGTCTTA CGACATCATT GGAATCAAAA CTGGAGTGTT 
CTCTGTCGCT TTCGCTTCTA TACTTCTCTT CCTCTTGGCT TCTCCAATAG 
CCATTCCTTT CCACTCCTTC ATCAAGAGCT TGAACTACGG TGAACAAGAT 
GACTTAGAAG GACGGATTCA AGAACCGTTG CTTAGATCCG AGATAGCGGC 
AGCGGAGAAA GAAGTAATAG TTGTAGCTGC GGTGGCAGCG GAAGAGGAGG 
AGAAGAAGAG GAAGAAACCG GTTTTGGGAG AAGACCACAC TATAATGGAA 
GCAGTGTTGA CCGTTGACTT TTGGGTGCTT TTTGTGTCCT TCTTGTGTGG 
TGTAGGAACT GGTTTAGCTG TGATGAACAA TATGGGTCAG ATAGGTCTTG 
CCCTTGGATA CACAAATGTC TCAATCTTTG TCTCCATGAC TAGTATTTGG 
GGATTCTTCG GTCGCATTCT CTCCGGTACT CTCTCCGAAT ACTTTCTCAA 
GAAAGCTGGA ACACCAAGAC CACTATGGAA TGCAGCCTCT CAAATCCTTA 
TGGCCGTAGG ATATATACTA ATGGCTTTAG CCGTGCCTAA TTCACTCTAC 
ATCGGTTCAA TGGTGGTTGG AGTATGTTAC GGTGTCCGTC TAGCCATAAC 
TGTACCAACA GCTTCCGAAC TCTTTGGTCT CAAATACTAC GGTCTCATCT 
ACAACATCTT AGTACTTAAC TTGCCACTTG GCTCGTTTCT CTTCTCGGGT 
CTCCTCGCTG GCTTCCTCTA CGATGCAGAG GCAACACCAA CTCCTGGTGG 
GGGCAACACG TGCGTAGGAG CTCATTGCTA CCGTCTCATC TTCATAGTCA 
TGGCATTAGC TTCTGTTATC GGAGTCGGTT TGGATCTTGT GTTGGCTTAT 
AGGACTAAGG AGATTTACGC TAAGATTCAC GCTAGCAAGA AGTCAAAGAA 
ATCTGGTGGT AGCCTTAGTT AAGACACTGT ATATCTAGTT CCGGTGCACT 
ACATTGTTTT CAGATGCTGA TTTTGTATAC ATGATACAAT ATCGGATTCA 
AGATATTGTT GAACAAAATT TCAAGTACCA GAGATCATTG TTGTAGTAGC 
ATCGCCAATG TATTTTTTTG TCTTTCCGAA AAAAAAAAAA AAAA

Gene models with high sequence identity

AT2G16660.1 [+] show detail - Major facilitator superfamily protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Nodulin-like	1.3e-95
HMMPanther	UNCHARACTERIZED NODULIN-LIKE PROTEIN	9.5e-208
superfamily	Major facilitator superfamily, general substrate transporter	4.2e-25

See the detailed result >

AT2G16660.1

Model type: Protein coding
Short Description: Major facilitator superfamily protein
Computational Description: Major facilitator superfamily protein; INVOLVED IN: response to karrikin; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nodulin-like (InterPro:IPR010658), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT4G34950.1); Has 3381 Blast hits to 3270 proteins in 872 species: Archae - 26; Bacteria - 1620; Metazoa - 6; Fungi - 314; Plants - 598; Viruses - 0; Other Eukaryotes - 817 (source: NCBI BLink).
Link: InterPro Scan - TAIR