F13706

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased size (PATO:0000586) (Seed::Shape::large) increased length (PATO:0000573) (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F13706

Determination of introduced cDNA(s)

RAFL09-20-L05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-20-L05 - Resource: pda05586

full reading [+] show sequence

CGGTGCACAT TAGCCCCAAC CAATCAAAAT CATATATCCC GTTCTCCGGC 
GACTCTTCGT CGTGAGCTTC CGTCATGGCC ACATGGAACG CATCCTCCCC 
TGCGGCGTCT CCTTGCTCAT CGAGGCGACG AACGAAAGCT CCAGCGAGAC 
GCCCTTCCTC CGAATCTCCA CCACCGAGGA AGATGAAATC AATGGCTGAG 
ATAATGGCGA AATCTGTCCC TGTGGTTGAA CAAGAAGAAG AAGAAGACGA 
AGACAGCTAC AGTAACGTCA CCTGCGAGAA ATGTGGTTCT GGAGAAGGAG 
ACGATGAGCT TCTTCTCTGT GACAAATGCG ATAGAGGCTT TCACATGAAA 
TGCCTTAGAC CCATTGTTGT TCGTGTCCCC ATTGGAACTT GGCTTTGTGT 
CGATTGTTCC GACCAACGAC CTGTAAGAAA AGAAACTAGA AAGCGGAGAC 
GATCTTGCTC TTTGACAGTG AAGAAAAGAA GGAGAAAACT CTTACCTTTG 
GTTCCATCAG AAGATCCTGA TCAGAGGCTT GCACAAATGG GAACACTTGC 
TTCTGCATTA ACGGCATTGG GTATCAAATA CAGCGATGGT TTAAATTATG 
TTCCCGGAAT GGCTCCTCGG TCTGCAAATC AATCCAAGTT AGAGAAAGGT 
GGGATGCAGG TGCTATGCAA AGAAGATTTA GAGACATTGG AACAATGTCA 
ATCTATGTAT AGACGAGGAG AATGCCCTCC TCTCGTTGTG GTATTTGATC 
CGCTTGAAGG TTACACAGTT GAAGCAGATG GTCCTATTAA GGACTTAACA 
TTCATAGCTG AATATACAGG GGATGTTGAT TACTTGAAAA ACCGAGAAAA 
AGACGATTGT GACAGCATCA TGACTCTCCT TTTATCAGAA GATCCTTCAA 
AGACTCTTGT TATCTGTCCA GACAAGTTTG GAAACATATC TCGCTTCATT 
AATGGCATTA ACAATCACAA TCCGGTTGCT AAGAAGAAGC AGAACTGCAA 
ATGCGTGAGG TATAGCATAA ACGGCGAATG TCGAGTTCTT CTAGTGGCTA 
CACGCGATAT ATCGAAAGGG GAAAGGCTCT ATTATGACTA CAATGGTTAT 
GAACATGAGT ATCCTACTCA TCACTTCCTC TGATCTTTCA ATTCTAACAG 
TTCTACAGAG TCTCTAGATC AGATGTTCTT TTTGTTGCCA TATTACAGGT 
CAATTATAAA TGTAGGGCTG CTGAATATAT GGCCTTTAAT TATGAAGTTA 
GCGGTAGAAT AATTGGATTT GGAATGACAT TACAGAGATT AAGATGTGGC 
AAATGTCAAT TGCTGAACTT TTGTTTGATA TCAAATGAAA TCCTAACCTT 
TTTCTTATAC

Gene models with high sequence identity

AT5G09790.1 [+] show detail - ARABIDOPSIS TRITHORAX-RELATED PROTEIN 5
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMSmart	Zinc finger, PHD-type	0.000000000043
HMMSmart	SET domain	0.00042
Gene3D	no description	0.000000000000021
superfamily	SET domain	4e-26
superfamily	Zinc finger, FYVE/PHD-type	0.000000000000023
PatternScan	Zinc finger, PHD-type, conserved site	0
HMMPfam	Zinc finger, PHD-finger	0.0000000004
HMMPfam	SET domain	0.000002
HMMPanther	MYST-RELATED	1.5e-230
HMMPanther	MYST-RELATED PROTEINS	1.5e-230
ProfileScan	Zinc finger, PHD-finger	10.131
ProfileScan	SET domain	14.412

See the detailed result >

AT5G09790.1

Model type: Protein coding
Short Description: ARABIDOPSIS TRITHORAX-RELATED PROTEIN 5
Curator Summary: Encodes a SET-domain protein, a H3K27 monomethyltransferases required for chromatin structure and gene silencing. Regulates heterochromatic DNA replication. Contains a PCNA-binding domain. ATXR5 accumulates preferentially during the late G1 or S phase, suggesting that it plays a role in cell-cycle regulation or progression. A plant line expressing an RNAi construct directed against this gene has reduced agrobacterium-mediated tumor formation.
Computational Description: ARABIDOPSIS TRITHORAX-RELATED PROTEIN 5 (ATXR5); CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (TAIR:AT5G24330.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR