F13742

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F13742

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F13742

Determination of introduced cDNA(s)

  • RAFL08-08-P22 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL08-08-P22 - Resource: pda04513

    full reading [+] show sequence

    Nucleotide sequence: RAFL08-08-P22 - full reading
    GGGGTTCGAG CTACATAGAG AGAGGTATGA TGAATCCGAG TCACGGAAGA 
    GGACTCGGAT CGGCTGGTGG GTCCAGCTCC GGTAGAAATC AAGGAGGTGG
    TGGTGAGACC GTCGTCGAGA TGTTTCCTTC TGGTCTTCGA GTTCTTGTCG
    TTGACGATGA CCCAACTTGT CTCATGATCT TAGAGAGGAT GCTTAGGACT
    TGTCTTTACG AAGTAACGAA ATGCAACAGA GCAGAGATGG CATTGTCTCT
    GCTCCGGAAG AACAAACATG GATTCGATAT AGTAATCAGT GATGTTCATA
    TGCCTGACAT GGACGGTTTC AAGCTTCTTG AGCATGTTGG TCTAGAGATG
    GACTTACCTG TTATCATGAT GTCTGCGGAT GATTCAAAGA GTGTGGTTCT
    AAAGGGAGTA ACGCACGGTG CGGTTGATTA CCTTATCAAG CCTGTACGTA
    TGGAGGCACT TAAGAACATA TGGCAGCATG TAGTTAGGAA GAGGAGAAGT
    GAATGGAGTG TACCGGAACA TTCTGGGAGC ATTGAGGAGA CTGGCGAGAG
    ACAGCAGCAG CAACATAGAG GAGGTGGTGG TGGTGCAGCT GTTTCTGGTG
    GAGAGGATGC GGTGGATGAT AACTCATCCT CGGTTAACGA AGGTAACAAT
    TGGAGGAGCA GTTCACGGAA GAGGAAAGAC GAGGAAGGAG AAGAGCAAGG
    AGATGATAAG GACGAAGATG CGTCGAATTT GAAGAAACCG CGTGTCGTCT
    GGTCTGTTGA ATTGCATCAG CAGTTTGTTG CTGCTGTTAA TCAGCTCGGC
    GTTGAGAAGG CGGTTCCTAA AAAGATCTTA GAGCTGATGA ATGTTCCTGG
    TCTAACCCGA GAAAACGTAG CAAGTCACCT CCAGAAATAC CGGATATATC
    TAAGACGGCT TGGAGGGGTA TCGCAGCACC AAGGCAATCT TAACAACTCG
    TTTATGACGG GTCAGGATGC GAGCTTCGGA CCTCTTTCGA CATTGAATGG
    GTTTGATCTT CAAGCACTAG CCGTCACAGG TCAGTTACCT GCACAGAGTC
    TTGCACAGCT TCAAGCCGCT GGTTTAGGCC GGCCTGCGAT GGTCTCTAAG
    TCAGGTTTGC CGGTTTCCTC CATTGTGGAT GAGAGAAGCA TCTTCAGCTT
    TGACAACACG AAAACAAGAT TTGGAGAAGG GCTTGGGCAT CACGGGCAAC
    AACCCCAACA GCAACCACAG ATGAACTTAC TTCACGGTGT CCCCACGGGT
    TTACAACAGC AGCTTCCTAT GGGTAATCGA ATGAGTATTC AACAACAGAT
    TGCTGCTGTT CGAGCTGGAA ATAGTGTTCA AAACAACGGA ATGCTGATGC
    CTCTAGCGGG TCAGCAGTCT TTGCCTCGGG GACCACCGCC TATGCTAACC
    TCTTCGCAAT CATCCATCAG GCAGCCGATG TTATCAAACC GCATTTCCGA
    GAGAAGTGGT TTCTCTGGAA GGAACAATAT CCCCGAGAGC AGCAGAGTGT
    TACCGACAAG TTACACTAAT CTCACAACAC AACACTCATC AAGCTCGATG
    CCTTATAACA ACTTCCAACC AGAACTTCCC GTGAACAGTT TCCCGCTGGC
    AAGTGCAACA GGGATATCAG TACCGGTTCG GAAAGCCACT TCTTACCAGG
    AAGAGGTTAA CAGCTCCGAA GCGGGTTTCA CTACGCCGAG CTACGACATG
    TTCACCACCA GACAGAATGA TTGGGATCTG AGGAATATTG GAATAGCCTT
    TGACTCACAT CAGGACTCAG AATCCGCTGC GTTTTCCGCT TCAGAAGCCT
    ACTCTTCTTC GTCCATGTCA AGACACAACA CGACAGTTGC AGCCACCGAG
    CATGGCCGAA ACCACCAGCA GCCACCATCG GGAATGGTAC AGCACCATCA
    GGTTTATGCA GACGGAAACG GTGGTTCAGT GAGGGTGAAA TCAGAGAGAG
    TGGCTACGGA TACAGCAACA ATGGCGTTTC ACGAGCAGTA TAGTAATCAA
    GAAGATCTTA TGAGCGCACT TCTTAAGCAG GAAGGGATTG CACCGGTTGA
    TGGCGAATTC GACTTTGACG CATACTCCAT CGATAACATT CCGGTTTGAT
    TGGATAAAAA AACCGATAAA CCGGAGGGAC TACCCGGATC TGTACTGTAT
    CATTTTTACA CGACGATCTA CTAAAACTTG TTTGATATAT ATGTAGTCTG
    CATGAAATTT TAAATGGCAG ATTATATAAG AAATAATTAT TCATGTTAGG
    GGTTAATATC CTTGGAGATT CTTTTGTTCC TCATTTATGT AGTGAGGCTG
    TTTAGGGTTT TGTAAGTATG TATTTCGAGT T

    Gene models with high sequence identity

    1. AT3G16857.2 [+] show detail - response regulator 1
      E-value: 0; Score: 99.96

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Signal transduction response regulator, receiver domain 1.7e-21
    HMMPfam Myb, DNA-binding 4e-11
    Gene3D no description 2.7e-30
    Gene3D Homeodomain-related 1.9e-23
    HMMPanther TWO-COMPONENT SYSTEM SENSOR HISTIDINE KINASE/ 1.7e-17
    HMMPanther SENSOR HISTIDINE KINASE-RELATED 1.7e-17
    HMMPIR Response regulator, plant B-type 0
    ProfileScan Signal transduction response regulator, receiver domain 31.592
    ProfileScan HTH transcriptional regulator, Myb-type, DNA-binding 11.54
    superfamily CheY-like 1.2e-36
    superfamily Homeodomain-like 2.5e-20
    HMMTigr Myb-like DNA-binding domain, SHAQKYF class 3e-30
    HMMSmart Signal transduction response regulator, receiver domain 7.4e-31

    See the detailed result >

    AT3G16857.2

    Model type
    Protein coding
    Short Description
    response regulator 1
    Curator Summary
    Encodes an Arabidopsis response regulator (ARR) protein that acts in concert with other type-B ARRs in the cytokinin signaling pathway.
    Computational Description
    response regulator 1 (RR1); CONTAINS InterPro DOMAIN/s: Response regulator, plant B-type (InterPro:IPR017053), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), CheY-like (InterPro:IPR011006), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Signal transduction response regulator, receiver domain (InterPro:IPR001789), Homeodomain-related (InterPro:IPR012287), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: response regulator 2 (TAIR:AT4G16110.1); Has 98862 Blast hits to 97820 proteins in 3027 species: Archae - 653; Bacteria - 87858; Metazoa - 53; Fungi - 404; Plants - 2787; Viruses - 5; Other Eukaryotes - 7102 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR