F14342

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F14342

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F14342

Determination of introduced cDNA(s)

  • RAFL19-59-C19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL19-59-C19 - Resource: pda11335

    full reading [+] show sequence

    Nucleotide sequence: RAFL19-59-C19 - full reading 
    GAACTGAGGA TTTTTCTCGG CCAAGTTTTC TCTAGCTCAG GTGTTTGATG 
    TGAATTTTTT GAGGGAGGGG AATGAGTTCA ATGAGCAGAA GCAGAAGTCG 
    AAGTAGAAGT CGTAGTCGGG ATCGGTTTCG TAGTCGGAGT CCGAGAGACA 
    GGAGAATGAG ATCTGAACGA GTTTCTTACC ATGATGCTCC TTCTAGAAGG 
    GAGAGGGAGC CACGTCGTGC CTTCAGCCAA GGAAATCTCT GCAACAACTG 
    CAAGCGACCT GGTCACTTTG CAAGAGACTG TTCTAATGTT TCCGTCTGTA 
    ACAACTGTGG TCTTCCAGGG CACATTGCAG CAGAATGCAC TGCGGAATCA 
    CGTTGTTGGA ACTGTAGAGA ACCGGGCCAC GTAGCCTCAA ACTGTTCAAA 
    CGAAGGAATC TGCCACTCCT GTGGTAAATC TGGACATCGA GCCAGAGACT 
    GCTCTAATTC GGATTCTCGT GCAGGAGACT TAAGGCTCTG CAACAACTGC 
    TTCAAACAGG GACATCTTGC CGCTGACTGC ACAAATGACA AGGCGTGCAA 
    GAACTGCAGG ACTTCAGGTC ACATAGCTCG CGATTGCAGG AACGATCCAG 
    TTTGTAACAT CTGCAGTATC TCGGGGCATG TTGCTAGACA CTGCCCAAAG 
    GGTGACAGCA ATTACTCTGA CAGAGGAAGC AGGGTTCGAG ATGGTGGTAT 
    GCAAAGAGGT GGTTTGAGCA GAATGAGCAG AGACAGAGAA GGCGTTAGTG 
    CTATGATAAT ATGTCACAAT TGTGGTGGCC GAGGACACAG GGCGTACGAG 
    TGTCCGTCTG CTCGAGTCGC TGACCGTGGA TTCCGCCGGT ACTGAGGCTC 
    TTAAATTTAC CAATTGAAGT TCCATTCATC TTCACCTTTA CCCTTTTAGC 
    TTCTGCACTC TTGTTTTTGT TGAGCTACAT TGTTGTTTTC TAATCTCATG 
    GTTTTTGTCT ATTGGAGTGA ATCAAGGATG GTTTTAGTTT TGGTTTGTTT 
    TCGGAAAATT TGAGACATTG CTTGTGTTGT ATGAAGTATT GAACAGATTA 
    GTGTGATGCA GAGTTCTGAG TTTTCAGAAC TCAATATTAT ATTAAAAAAA 
    AAAAAAAAAA AAAG

    Gene models with high sequence identity

    1. AT1G75560.1 [+] show detail - zinc knuckle (CCHC-type) family protein
      E-value: 0; Score: 99.91

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Zinc finger, CCHC-type 3.9e-06
    HMMPfam Zinc finger, CCHC-type 7.1e-05
    HMMPfam Zinc finger, CCHC-type 4e-06
    HMMPfam Zinc finger, CCHC-type 3.2e-05
    HMMPfam Zinc finger, CCHC-type 0.0012
    HMMPfam Zinc finger, CCHC-type 0.00028
    HMMPfam Zinc finger, CCHC-type 0.22
    HMMPfam Zinc finger, CCHC-type 2.4e-05
    HMMPanther CELLULAR NUCLEIC ACID BINDING PROTEIN 8.8e-69
    HMMPanther ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 8.8e-69
    superfamily Retrovirus zinc finger-like domains 2.6e-09
    superfamily Retrovirus zinc finger-like domains 2.1e-08
    superfamily Retrovirus zinc finger-like domains 2.4e-08
    superfamily Retrovirus zinc finger-like domains 1.4e-07
    HMMSmart Zinc finger, CCHC-type 0.001
    HMMSmart Zinc finger, CCHC-type 0.0026
    HMMSmart Zinc finger, CCHC-type 0.0014
    HMMSmart Zinc finger, CCHC-type 0.0032
    HMMSmart Zinc finger, CCHC-type 0.006
    HMMSmart Zinc finger, CCHC-type 0.012
    HMMSmart Zinc finger, CCHC-type 0.099
    HMMSmart Zinc finger, CCHC-type 0.0034
    Gene3D Zinc finger, CCHC retroviral-type 0.00033
    Gene3D Zinc finger, CCHC retroviral-type 2.1e-05
    Gene3D Zinc finger, CCHC retroviral-type 0.00087
    ProfileScan Zinc finger, CCHC-type 9.471
    ProfileScan Zinc finger, CCHC-type 10.23
    ProfileScan Zinc finger, CCHC-type 9.521
    ProfileScan Zinc finger, CCHC-type 9.142
    ProfileScan Zinc finger, CCHC-type 9.109
    ProfileScan Zinc finger, CCHC-type 8.73
    ProfileScan Zinc finger, CCHC-type 9.653

    See the detailed result >

    AT1G75560.1

    Model type
    Protein coding
    Short Description
    zinc knuckle (CCHC-type) family protein
    Computational Description
    zinc knuckle (CCHC-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878), Zinc finger, CCHC retroviral-type (InterPro:IPR013084); BEST Arabidopsis thaliana protein match is: cold shock domain protein 1 (TAIR:AT4G36020.1); Has 19425 Blast hits to 13089 proteins in 377 species: Archae - 0; Bacteria - 14; Metazoa - 2237; Fungi - 1342; Plants - 858; Viruses - 14254; Other Eukaryotes - 720 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR