F14351

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F14351

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F14351

Determination of introduced cDNA(s)

  • RAFL05-15-K18 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-15-K18 - Resource: pda17094

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-15-K18 - full reading 
    CCGATCAGTT AATCAACGCA ACGCCGAGAA GCTTTTTCAG GGGTTTGGTG 
    CGTTGAATTT GTGGATCAAG AAACAATGCA AATTCAATGC AAAACCCTAA 
    CTTTTACAGT TTCTTCGATT CCTTGTAACC CAAAGCTACC ATTCCCATCT 
    TCCCTCACTT TACGGTCATG GAATCCTTCA TTCCCGAGTT TCAGGAGCTC 
    CGCTGTTTCC GGACCAAAGT CATCACTGAA GCTGAACAGG TTTTTAAGAA 
    ACTGTGCAAG TACGAATCAG GAGCTTGTTG TTGATGGAGA AACCGGAAAT 
    GGGTCGATTT CGGAGCTCCA AGGAGATGCA GCAAATGGTT CGATTTCGCC 
    GGTGGAAGTG GAAGCAGAAG TAGAAGAAGT GAAGGTAGAT GATTTGGCGA 
    CTCAGAGCAT TTGGGGACAG ATGAAAGAGA TCGTCATGTT TACCGGACCT 
    GCCGCGGGAT TGTGGCTATG TGGGCCGTTG ATGAGTCTCA TTGATACGGC 
    GGTGATTGGT CAAGGAAGCT CACTCGAACT CGCTGCTTTA GGTCCTGCTA 
    CCGTCATCTG TGATTATTTG TGTTATACGT TCATGTTCCT CTCAGTTGCG 
    ACTTCAAATC TTGTTGCTAC CTCTCTTGCT CGGCAGGATA AAGATGAAGT 
    ACAACATCAG ATATCGATCT TGCTTTTCAT TGGGTTGGCT TGTGGAGTCA 
    CGATGATGGT GTTGACAAGA CTGTTTGGTT CCTGGGCACT AACTGCTTTT 
    ACAGGGGTAA AGAATGCCGA CATTGTTCCA GCAGCTAATA AATATGTTCA 
    GATTCGTGGT TTAGCATGGC CAGCTGTTCT CATTGGATGG GTTGCTCAAA 
    GTGCAAGTCT TGGTATGAAA GACTCATGGG GACCTCTTAA GGCTTTGGCG 
    GTTGCTAGTG CAATAAACGG TGTTGGTGAT GTGGTCTTAT GCACCTTTCT 
    AGGATATGGT ATAGCAGGTG CAGCTTGGGC AACTATGGTG TCACAAGTTG 
    TTGCTGCTTA TATGATGATG GACGCATTGA ACAAGAAAGG ATACAGCGCA 
    TTCTCATTCT GTGTTCCTTC TCCAAGTGAA CTTTTGACGA TTTTTGGACT 
    CGCTGCCCCT GTCTTTATAA CTATGATGTC AAAGGTTTTG TTCTATACGC 
    TCCTTGTGTA CTTTGCTACA TCAATGGGTA CAAATATCAT AGCTGCTCAT 
    CAGGTTATGC TTCAGATATA TACCATGAGT ACGGTTTGGG GGGAGCCTCT 
    CTCTCAAACT GCACAGTCCT TTATGCCTGA GCTTTTATTC GGAATCAATC 
    GTAATTTGCC TAAAGCTAGG GTGCTTCTGA AGTCACTAGT TATCATCGGA 
    GCTACGCTAG GAATAGTAGT CGGAACCATT GGCACAGCAG TTCCATGGCT 
    GTTCCCTGGC ATCTTCACAC GTGACAAGGT TGTCACATCC GAGATGCACA 
    AGGTCATAAT ACCGTATTTT CTTGCTTTAT CCATCACTCC AAGTACTCAC 
    AGTCTTGAAG GCACCTTACT GGCTGGAAGA GATCTTAGAT ATATCAGCTT 
    GTCAATGACT GGATGCTTAG CGGTCGCTGG GCTTCTACTT ATGCTTCTGA 
    GCAATGGAGG ATTTGGTTTG AGAGGCTGCT GGTATGCTCT CGTGGGATTC 
    CAATGGGCTC GGTTTTCTCT ATCTCTTTTC CGCCTTCTAT CGCGGGATGG 
    TGTACTGTAC TCCGAAGATA CAAGCCGATA CGCTGAGAAA GTGAAAGCTG 
    CGTAGCTCAG TAAGTCACCG TATACCTCAC AAGAAAAAGT ATAATGAACA 
    GAGAACAGCT TCATTCAGTT GTAGATCAAT GGGTTACTCT GTTTCAAGAT 
    TGTATTCTTT AAGAACATGA AAATGTATTC GACTGAATAG AAAAGTCTTG 
    GCATTAATAG GCCCTGCTTC AACTCCTGTG ATTCCCCTGT ATATAAAAGA 
    TGATACAAAC AAACTAAAAA AAAAA

    Gene models with high sequence identity

    1. AT2G21340.1 [+] show detail - MATE efflux family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther DNA-DAMAGE-INDUCIBLE PROTEIN F 5.3e-191
    HMMPanther Multi antimicrobial extrusion protein MatE 5.3e-191
    HMMPfam Multi antimicrobial extrusion protein MatE 4.8e-12

    See the detailed result >

    AT2G21340.1

    Model type
    Protein coding
    Short Description
    MATE efflux family protein
    Computational Description
    MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT4G39030.1); Has 7799 Blast hits to 7783 proteins in 1733 species: Archae - 152; Bacteria - 6456; Metazoa - 30; Fungi - 49; Plants - 387; Viruses - 0; Other Eukaryotes - 725 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR