F14409

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F14409

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F14409

Determination of introduced cDNA(s)

  • RAFL04-16-A16 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-16-A16 - Resource: pda00563

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-16-A16 - full reading 
    AAAACCAGGC AGCCACTAGA AGAAGGAGAG ATATTGAGGG AGAAGAGTCA 
    CATTGATAGA TTCGCCGCCG ATCTAGAGCC GTTGATTTTC TTAATCGGAA 
    AAAGAAAATG AGTGGAAGCA GAAGGAAGGC GACGCCGGCG AGTAGGACGC 
    GAGTAGGGAA TTACGAGATG GGACGAACTC TCGGAGAAGG AAGCTTCGCT 
    AAGGCGAAAT ACGCCAAGAA CACCGTCACC GGAGATCAAG CCGCTATCAA 
    AATCCTCGAC CGAGAAAAGG TCTTCCGTCA CAAAATGGTC GAACAGCTTA 
    AAAGAGAAAT ATCTACAATG AAACTGATTA AACATCCAAA TGTGGTTGAA 
    ATCATTGAGG TTATGGCGAG CAAAACGAAG ATCTATATCG TTCTTGAGCT 
    TGTCAATGGA GGTGAACTCT TTGATAAAAT CGCGCAACAA GGGAGGCTTA 
    AGGAGGATGA AGCTCGGAGA TATTTTCAGC AGCTCATCAA TGCTGTGGAT 
    TACTGCCACA GTCGAGGTGT CTACCACAGA GATCTCAAGC CTGAAAATCT 
    GATCCTTGAC GCAAATGGGG TTTTGAAAGT CTCTGATTTT GGGTTAAGCG 
    CCTTCTCACG ACAAGTTCGG GAAGATGGTT TGCTTCATAC AGCTTGTGGA 
    ACGCCAAACT ACGTTGCCCC TGAGGTTTTG TCGGACAAAG GCTATGACGG 
    TGCAGCAGCA GATGTCTGGT CTTGTGGTGT CATTCTCTTT GTGCTTATGG 
    CTGGTTACTT GCCTTTTGAT GAGCCGAATC TCATGACATT ATACAAACGT 
    ATATGCAAGG CTGAGTTTAG CTGCCCACCA TGGTTCTCGC AAGGTGCCAA 
    GAGAGTCATC AAGCGTATTC TCGAACCCAA CCCTATTACC AGAATAAGTA 
    TTGCAGAGTT GCTCGAAGAT GAATGGTTCA AGAAAGGGTA CAAGCCGCCA 
    TCATTTGACC AAGATGACGA GGACATAACC ATAGATGATG TTGATGCTGC 
    TTTTAGTAAC TCCAAGGAAT GTCTTGTAAC TGAGAAGAAG GAGAAACCTG 
    TATCCATGAA CGCTTTCGAA CTTATCTCTA GCTCAAGCGA GTTCAGTCTT 
    GAAAACTTGT TCGAGAAGCA AGCGCAACTT GTGAAGAAAG AAACGCGGTT 
    TACTTCTCAA CGATCTGCGA GTGAAATAAT GTCGAAAATG GAAGAAACCG 
    CAAAGCCATT AGGCTTTAAT GTCCGTAAAG ACAACTACAA GATAAAAATG 
    AAAGGAGACA AAAGTGGTCG TAAAGGTCAG CTCTCCGTAG CTACAGAGGT 
    GTTTGAAGTG GCGCCATCAT TGCATGTGGT AGAGCTTAGG AAAACCGGTG 
    GTGATACCCT CGAGTTTCAC AAGTTCTACA AAAACTTCTC ATCTGGATTA 
    AAGGATGTAG TCTGGAATAC TGATGCAGCC GCTGAAGAAC AAAAGCAATA 
    AGAAATAACA AGTTGTTTCA ATTCAAAGTT TTTAATCAAT GTTGAACATG 
    TATAATGAAT AGTAAACATT CTGGAGTTGG CAATATACAA GTATTGCTGA 
    CAAAAGAGCC AAACTAGAAC TAGAAGTGGT CTATAGAGGT AGATCACCAT 
    AGGTTAGTCA ATAGCCACAT ATGTGATCAT CCTCAAACTC GGTTTGAAAC 
    CTATAAATCA AAGTTCAAG

    Gene models with high sequence identity

    1. AT1G01140.1 [+] show detail - CBL-interacting protein kinase 9
      E-value: 0; Score: 99.82

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Protein kinase-like domain 1e-87
    Gene3D no description 1.9e-66
    HMMPanther CBL-interacting protein kinase 4e-234
    HMMPanther Calcium/calmodulin-dependent protein kinase-like 4e-234
    ProfileScan Protein kinase, catalytic domain 50.52
    ProfileScan NAF/FISL domain 11.786
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Serine/threonine-protein kinase, active site 0
    HMMSmart Serine/threonine-protein kinase domain 1.8e-102
    HMMSmart Tyrosine-protein kinase, catalytic domain 2.1e-12
    HMMPfam Serine/threonine-protein kinase-like domain 1.4e-70
    HMMPfam NAF domain 2.6e-23

    See the detailed result >

    AT1G01140.1

    Model type
    Protein coding
    Short Description
    CBL-interacting protein kinase 9
    Curator Summary
    Encodes a CBL-interacting protein kinase with similarity to SOS2
    Computational Description
    CBL-interacting protein kinase 9 (CIPK9); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: in 6 processes; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), NAF/FISL domain (InterPro:IPR018451), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), CBL-interacting protein kinase (InterPro:IPR020660), NAF domain (InterPro:IPR004041), Protein kinase, catalytic domain (InterPro:IPR000719), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: CBL-interacting protein kinase 23 (TAIR:AT1G30270.1); Has 130203 Blast hits to 128118 proteins in 4349 species: Archae - 165; Bacteria - 15262; Metazoa - 47961; Fungi - 13206; Plants - 31482; Viruses - 522; Other Eukaryotes - 21605 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR