F14520

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F14520

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F14520

Determination of introduced cDNA(s)

  • RAFL03-01-A05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL03-01-A05 - Resource: pda00021

    full reading [+] show sequence

    Nucleotide sequence: RAFL03-01-A05 - full reading 
    GAGAGACCCA TCCCTCACTT CAAAGTTCAA AGTCTCGAAG GATCTTCTCC 
    AACTCTCTCT AAACAAGATT CCAAATTTTC AAAGGTGAAT TTGTTTGATA 
    GAATCAAGAA CAAACCTTTA AAATGGCGCA TCTACTTTCA GCTTCATGCC 
    CTTCAGTTAT CTCACTTAGC AGCAGCAGCA GCAAGAATTC AGTTAAGCCG 
    TTTGTTTCAG GGCAGACCTT CTTCAATGCT CAGCTTCTTT CAAGATCTTC 
    TCTCAAAGGA CTTCTCTTCC AAGAGAAGAA ACCGAGAAAA AGCTGCGTTT 
    TCAGAGCAAC TGCTGTACCT ATAACCCAAC AAGCACCACC CGAAACATCT 
    ACCAATAACT CATCCTCTAA ACCAAAGCGT GTTATGGTCA TTGGTGGAGA 
    TGGTTATTGC GGTTGGGCTA CTGCTCTCCA CTTGTCCAAG AAGAATTACG 
    AAGTTTGCAT TGTTGACAAC CTTGTAAGAC GTCTTTTCGA CCACCAGCTT 
    GGACTTGAGT CATTGACTCC TATTGCCTCC ATTCATGACC GAATCAGCCG 
    ATGGAAGGCT TTGACAGGGA AATCAATTGA GTTGTACGTT GGTGATATCT 
    GTGATTTCGA ATTCTTAGCT GAGTCTTTCA AGTCTTTTGA GCCGGATTCA 
    GTTGTCCACT TTGGGGAACA GAGATCCGCT CCTTACTCGA TGATTGACCG 
    GTCCAGAGCA GTTTATACAC AGCACAACAA TGTGATTGGG ACTCTCAACG 
    TTCTCTTTGC TATAAAAGAG TTTGGAGAGG AGTGTCATCT TGTAAAACTT 
    GGGACGATGG GTGAGTATGG AACTCCAAAT ATTGACATCG AGGAAGGTTA 
    TATAACCATA ACCCACAACG GTAGAACTGA CACTTTGCCA TACCCCAAGC 
    AAGCTAGCTC CTTTTATCAT CTTAGCAAAG TTCATGATTC GCACAACATT 
    GCTTTTACTT GCAAGGCTTG GGGTATTAGA GCCACTGATC TCAACCAAGG 
    AGTTGTTTAT GGAGTGAAGA CTGATGAGAC AGAGATGCAT GAGGAACTCC 
    GTAACCGACT GGATTACGAT GCTGTGTTTG GTACAGCACT TAACCGGTTC 
    TGTGTGCAAG CTGCTGTTGG TCACCCACTT ACAGTTTATG GTAAAGGTGG 
    TCAGACGAGA GGCTACCTCG ATATAAGAGA CACGGTTCAA TGTGTTGAGA 
    TCGCTATAGC AAACCCGGCA AAAGCTGGTG AGTTCCGGGT CTTCAACCAA 
    TTTACAGAAC AGTTTTCAGT CAATGAACTG GCTTCACTCG TCACTAAAGC 
    GGGTTCAAAG CTTGGGCTAG ACGTGAAAAA GATGACGGTG CCTAACCCGA 
    GAGTGGAGGC AGAAGAACAT TACTACAACG CAAAGCACAC TAAGCTGATG 
    GAACTTGGAC TTGAGCCTCA CTATCTATCT GACTCACTTC TTGATTCGTT 
    GCTCAACTTT GCTGTTCAGT TTAAAGATCG TGTGGACACG AAACAAATCA 
    TGCCTAGTGT TTCCTGGAAG AAGATTGGCG TCAAGACTAA GTCCATGACC 
    ACATAAAGTG CAGACCAATA TTACACATAA GGAGAGATTA TGAAAGAGAT 
    GATGTGTTGT TTGGTATCTT CAAACTTCAT TTCTGCAAAA GACTTGCTAG 
    GCTTAAGAGG TTTTGTCCAT ATTACATTGT GCAGGTTCTT TAATGTTAGA 
    TCTTAATTTC GATGAAAATG TTATAATGTT GCCTTAAATG TTATGTAATG 
    AGAAAAACTA TATTATATGA AAAATAAGAA AATGTTAAAT AAGTAAC

    Gene models with high sequence identity

    1. AT4G33030.1 [+] show detail - sulfoquinovosyldiacylglycerol 1
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam NAD-dependent epimerase/dehydratase 3.1e-45
    HMMPanther UDP-SULFOQUINOVOSE SYNTHASE 1.5e-232
    HMMPanther NAD DEPENDENT EPIMERASE/DEHYDRATASE 1.5e-232
    superfamily NAD(P)-binding domain 5.5e-89
    Gene3D NAD(P)-binding domain 2.1e-67

    See the detailed result >

    AT4G33030.1

    Model type
    Protein coding
    Short Description
    sulfoquinovosyldiacylglycerol 1
    Curator Summary
    involved in sulfolipid biosynthesis
    Computational Description
    sulfoquinovosyldiacylglycerol 1 (SQD1); FUNCTIONS IN: UDPsulfoquinovose synthase activity, sulfotransferase activity, zinc ion binding; INVOLVED IN: cellular response to phosphate starvation, sulfolipid biosynthetic process, glycolipid biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); Has 10748 Blast hits to 10748 proteins in 2398 species: Archae - 273; Bacteria - 7931; Metazoa - 289; Fungi - 89; Plants - 466; Viruses - 5; Other Eukaryotes - 1695 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR