F15035

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F15035

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)

Invisible phenotypes

Original: F15035

Determination of introduced cDNA(s)

  • RAFL06-80-D11 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-80-D11 - Resource: pda03776

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-80-D11 - full reading 
    AAGCTTTGAA CGTTAGCAAA ATTATGTTAC CTACCACCAG TCCCTGGCTT 
    ATTATATAGA GAGAGATATT CACATTTACA ATTTCGATAT TGTTTCTCTA 
    AGATCGTAAA ATAGTACACC AAGCCATTTA TAAATTTCTT CACTCTCAGA 
    TTCAAAATAA TATAAATTAG AAATGGGAAC AGAGATGGTC ATGGTTCACG 
    AGGTTCCTTT TCCTCCACAG ATCATCACTT CCAAGCCACT CTCTCTTCTG 
    GGCCAAGGGA TCACAGACAT TGAGATCCAC TTTCTTCAAG TGAAGTTCAC 
    TGCGATCGGA GTTTACTTAG ATCCTTCAGA TGTTAAAACA CATCTTGATA 
    ACTGGAAAGG CAAAACCGGA AAAGAACTCG CCGGCGATGA TGACTTCTTC 
    GACGCCCTTG CCTCCGCGGA GATGGAGAAG GTTATAAGAG TGGTGGTGAT 
    AAAGGAGATA AAAGGAGCTC AGTACGGAGT GCAGCTAGAG AATACGGTGA 
    GAGATCGTTT GGCTGAGGAG GATAAGTACG AGGAAGAAGA AGAAACTGAG 
    CTCGAGAAGG TCGTTGGCTT TTTCCAGTCC AAGTACTTCA AAGCTAACTC 
    CGTTATCACT TACCATTTCT CAGCCAAAGA TGGCATTTGC GAGATCGGGT 
    TTGAGACGGA AGGTAAAGAA GAGGAGAAAC TGAAGGTGGA GAATGCGAAT 
    GTGGTGGGAA TGATGCAGAG ATGGTATTTG TCCGGAAGTC GTGGAGTCTC 
    ACCGTCGACT ATTGTCTCCA TCGCTGATTC AATCTCCGCA GTTTTAACCT 
    AAGAACCATG GCCCCTTACA TAAAAATTTG TATGTGTGTG TGTTTTATGT 
    AGTATTTTTT TTTTCCTCTT GTCAAGTTCC TGCTTTTGTA TCATCAAACT 
    TTTACTTTGG AGTTTGATAT GGCCGAACAA TATGGTAATT CCTTAATCTC 
    AATTTAAATC AGCTTTGCTC GTTTGGATTC AGAAAAAAAA AAAAAAAA

    Gene models with high sequence identity

    1. AT5G05270.1 [+] show detail - Chalcone-flavanone isomerase family protein
      E-value: 0; Score: 99.90

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Chalcone isomerase, 3-layer sandwich 7.1e-40
    HMMPfam Chalcone isomerase, subgroup 1.1e-48
    Coil coiled-coil 0
    superfamily Chalcone isomerase 2e-55

    See the detailed result >

    AT5G05270.1

    Model type
    Protein coding
    Short Description
    Chalcone-flavanone isomerase family protein
    Computational Description
    Chalcone-flavanone isomerase family protein; FUNCTIONS IN: intramolecular lyase activity, chalcone isomerase activity; INVOLVED IN: response to karrikin; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chalcone isomerase, subgroup (InterPro:IPR003466), Chalcone isomerase, 3-layer sandwich (InterPro:IPR016088), Chalcone isomerase (InterPro:IPR016087); BEST Arabidopsis thaliana protein match is: Chalcone-flavanone isomerase family protein (TAIR:AT3G55120.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR