F15049

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F15049

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
  • present in greater numbers in organism (PATO:0000470)
    (Stem::Number::many)
  • abnormal (PATO:0000460)
    (Stem::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F15049

Determination of introduced cDNA(s)

  • RAFL04-15-D01 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-15-D01 - Resource: pda00502

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-15-D01 - full reading 
    TGACGTCAAA CTCTCTCTAT ACACAGAGTT AAATTGAGTT TGTGTCTCGT 
    AACTTATCCT GTGAGCGAAA ATGGTGAAAG CAACTAAGGC AGAGAAGAAG 
    ATCGCCTACG ATACCAAGCT ATGTCAGCTT ATCGATGAGT ACACCCAGAT 
    CTTGGTCGTT GCGGCCGATA ACGTCGGATC AACTCAGCTT CAGAACATCA 
    GAAAGGGTCT TCGTGGAGAC TCCGTCGTGC TTATGGGGAA GAACACTATG 
    ATGAAGCGTT CCGTTAGGAT TCACTCTGAG AACACCGGAA ACACTGCAAT 
    CCTGAATCTG CTTCCTCTCC TTCAGGGAAA CGTTGGTTTG ATCTTTACCA 
    AAGGTGACCT CAAGGAAGTG AGCGAGGAGG TTGCTAAGTA CAAGGTTGGT 
    GCCCCTGCTC GTGTGGGTTT GGTGGCTCCA ATTGATGTGG TTGTCCAACC 
    TGGCAACACT GGTCTCGACC CATCCCAAAC ATCTTTCTTC CAGGTGCTTA 
    ACATCCCAAC CAAGATTAAC AAGGGTACCG TCGAAATCAT CACCCCAGTT 
    GAGCTTATCA AGCAAGGTGA CAAGGTCGGG TCTTCTGAGG CTGCGCTTCT 
    AGCCAAGCTT GGCATCAGGC CGTTCTCATA TGGTCTTGTT GTCCAGTCTG 
    TCTATGACAA TGGCTCAGTC TTCAGCCCAG AGGTTCTTGA TCTTACTGAA 
    GACCAACTTG TGGAGAAGTT TGCTTCTGGT ATCTCCATGG TCACTTCCTT 
    GGCTCTTGCT GTGTCGTACC CTACCCTTGC TGCTGCACCG CATATGTTCA 
    TCAATGCGTA CAAGAATGCC TTGGCTATTG CTGTTGCCAC TGAGTACACC 
    TTCCCTCAAG CAGAGAAGGT CAAGGAATAC TTGAAGGATC CAAGCAAGTT 
    TGCTGTTGCT TCAGTAGCTG CGGTGTCTGC TGATGCAGGT GGTGGTGCCC 
    CAGCTGCTGC TAAGGTAGAG GAGAAGGAAG AGTCCGACGA AGAAGACTAT 
    GGAGGTGATT TCGGTTTGTT CGATGAAGAG TAGATTTTGT CGGTTAAGAT 
    CTTACCTTTT TGTCGTGGAT TATAAGTGTT GCTTTGTTTT TAGTATGTTG 
    GACCTCAATT TTCTTGGTTT TAGCCAATCC AGTTTTATGT TACCAAAAAA 
    AAAAAAAAAA

    Gene models with high sequence identity

    1. AT3G09200.1 [+] show detail - Ribosomal protein L10 family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther 60S ACIDIC RIBOSOMAL PROTEIN P0 3.5e-178
    HMMPanther 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 3.5e-178
    HMMPfam Ribosomal protein L10 1.1e-21
    HMMPfam Ribosomal protein 60S 1.5e-16

    See the detailed result >

    AT3G09200.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein L10 family protein
    Computational Description
    Ribosomal protein L10 family protein; FUNCTIONS IN: structural constituent of ribosome, copper ion binding; INVOLVED IN: in 6 processes; LOCATED IN: in 7 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813), Ribosomal protein L10 (InterPro:IPR001790); BEST Arabidopsis thaliana protein match is: Ribosomal protein L10 family protein (TAIR:AT3G11250.1); Has 1610 Blast hits to 1607 proteins in 477 species: Archae - 322; Bacteria - 1; Metazoa - 504; Fungi - 287; Plants - 176; Viruses - 0; Other Eukaryotes - 320 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR