F15129

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F15129

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F15129

Determination of introduced cDNA(s)

  • RAFL09-96-J23 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-96-J23 - Resource: pda17928

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-96-J23 - full reading 
    GACTTGTTTC CTTATATATT CTTCTCCCTT TAAACATTTA ATCTTTTCCT 
    CTTCTACCAT CTCCACAAAT TCCAAACATC TCTCTCTCTT TCTCTCTCAC 
    ACACAAAATT GCAGAAGAAG AAGAGTCATG AATGGTGAAG AAAGCTTTGT 
    AGAAGATTGC TCTGTTTTTG TTGAGATTGA TCCTTCTGGA AGATATGGAA 
    GATACGATGA AATACTTGGC AAAGGAGCTT CAAAGACAGT ATACAGAGCA 
    TTTGATGAGT ATGAAGGTAT AGAAGTAGCA TGGAACCAAG TAAAGCTTCG 
    AAATTTCACA AGGAATCCTG AGGAATTAGA GAAGTTTTTC AGAGAGATTC 
    ATCTTCTCAA GACTTTGAAT CATCAAAACA TTATGAAATT CTACACTTCT 
    TGGGTTGATA CCAACAATTT ATCAATCAAT TTTGTCACTG AACTCTTCAC 
    CTCTGGTACT CTCAGACAGT ATAGGTTGAG ACATAGAAGA GTGAATATTA 
    GAGCAGTGAA GCAATGGTGC AAGCAGATTT TAAAAGGGCT TCTTTATTTA 
    CATAGTCGTT CTCCACCAAT TATACATAGA GATCTCAAAT GTGATAACAT 
    TTTCATCAAT GGAAACCAAG GTGAAGTCAA GATCGGTGAC CTTGGACTCG 
    CTGCGATTCT TCGTAAATCA CATGCCGTTC GTTGCGTTGG AACCCCTGAG 
    TTTATGGCTC CAGAAGTGTA TGATGAGGAA TATAATGAGT TGGTTGATGT 
    ATATGCTTTT GGCATGTGTG TGTTGGAGAT GGTTACTTTT GATTATCCTT 
    ACAGTGAATG TACTCACCCG GCACAAATCT ACAAGAAAGT TACCTCGGGG 
    AAAAAGCCTG AAGCTTTTTA CTTAGTGAAG GATCCTGAGG TTCGTGAGTT 
    TGTTGAGAAG TGTTTAGCTA ACGTGACGTG TAGGCTAACG GCATTGGAGC 
    TTTTACAAGA CCCTTTTCTA CAAGATGATA ATATGGATGG ATTTGTTATG 
    AGACCTATTG ATTACTACAA TGGTTATGAT GAAACTGGTG TGTTCCTTAG 
    ACATCCTTTG ATTGATGATC CTCTTTACCA TGATCAGTTT GAGTCGTCAC 
    AGATATGTGA GATCGATCTT TTCGCTAACG ATGATGAAGA TCATGTCGAC 
    ATTTCGATTA AAGGGAAGAG AAACGGTGAT GATGGGATAT TCTTGAGACT 
    TAGAATATCT GATGCTGAAG GACGGATAAG GAACATTTAC TTCCCGTTTG 
    AGACGGCTAT TGATACTGCA TGGAGTGTAG CGGTTGAGAT GGTGTCAGAG 
    CTCGACATAA CGAATCAAGA TGTTGCGAAA ATCGCGGAGA TGATCGATGC 
    AGAGATTGCT GCATTGGTGC CTGATTGGAA AAATGATACA GAAAGTTCCC 
    AAAATGTAAA CAACAACAAG AACAACAACA CTGCAGGATT CTGTGGAGAG 
    TGTGCTTCAA ACGGGTATAT ACAAGAGACT GTATCATCAG GAGAAAAATC 
    TCATCATAAT CATCATGAGT TCGATAGTTC TGAAGACAAG AGCTGTTCTT 
    CGGTTCACGG TAGGTTTGCG GATATGTGGG GTTTGCGAGA ATCATATTCT 
    GATGATGGAG AAAAACAGAG CTCAAGGAAG GTTAGAAGTG GACGGTGGTC 
    GGAGAATGAG ATGAGACGAG AACTGAGATG GCTTAAGGCA AGGCACAAGA 
    TTCAACTTAT GAAAATGAGA GGTCAAACGA TCTGCGAGAC ACCGATAGAG 
    ATCTCTCTTA CACCGGGAAC TTCAGTTTCG TTACCTCTTC TTTACAGGGC 
    TATATCACTT CCTGTGGATG CCGTGGATAT GTGACATTAT TGTAAAGTCT 
    GATGATAGTT ATCACTTATA TTTGTATGTT TCGACATTTT TAACTTTTGT 
    TAAGTTAAAA GTTAATGGCA AAAAAAAAA

    Gene models with high sequence identity

    1. AT3G22420.1 [+] show detail - with no lysine (K) kinase 2
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Protein kinase, catalytic domain 39.34
    PatternScan Serine/threonine-protein kinase, active site 0
    superfamily Protein kinase-like domain 3e-66
    HMMPfam Serine/threonine-protein kinase-like domain 1e-51
    HMMPanther SERINE/THREONINE-PROTEIN KINASE WNK (WITH NO 7.2e-200
    Gene3D no description 1.5e-24
    Gene3D no description 2e-45
    HMMSmart Serine/threonine-protein kinase domain 1.6e-60
    HMMSmart Tyrosine-protein kinase, catalytic domain 1.2e-13

    See the detailed result >

    AT3G22420.1

    Model type
    Protein coding
    Short Description
    with no lysine (K) kinase 2
    Curator Summary
    Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases. Its transcription is under the control of circadian rhythms.
    Computational Description
    with no lysine (K) kinase 2 (WNK2); CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: with no lysine (K) kinase 1 (TAIR:AT3G04910.1); Has 103279 Blast hits to 102406 proteins in 3863 species: Archae - 91; Bacteria - 9763; Metazoa - 38283; Fungi - 9889; Plants - 28050; Viruses - 396; Other Eukaryotes - 16807 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR