F15904

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F15904

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F15904

Determination of introduced cDNA(s)

  • RAFL07-12-D17 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL07-12-D17 - Resource: pda04170

    full reading [+] show sequence

    Nucleotide sequence: RAFL07-12-D17 - full reading 
    AACAAACCTA AGCTCAAAGC CCACCAAAAA GAAAACAATC ACTTAGCAAT 
    GGCGATGATC AGTTACTCCA CCATTGTGGT TGCTCTGCTT GCTTCTTTTA 
    TGATTTGCTC TGTTTCCGCC AATTTTCAAC GAGACGTAGA GATAACTTGG 
    GGAGACGGAC GTGGACAGAT CACAAACAAC GGCGATCTTC TTACACTCTC 
    TCTCGACAAA GCTTCAGGCT CAGGATTCCA ATCCAAGAAC GAATATTTGT 
    TCGGTAAAAT CGACATGCAG ATCGAACTCG TTGCCGGAAA CTCCGCTGGA 
    ACTGTCACCG CTTACTATTT GAAATCCCCT GGATCTACAT GGGACGAGAT 
    TGACTTTGAG TTCTTGGGAA ACCTAAGTGG TGATCCTTAC ACACTTCATA 
    CTAATGTCTT TACGCAAGGA AAAGGCGATA GAGAACAACA ATTCAAACTC 
    TGGTTCGATC CCACTAGTGA TTTCCACACT TACTCTATCC TCTGGAACCC 
    ACAACGCATC ATATTCTCCG TGGATGGAAC TCCCATAAGA GAATTCAAGA 
    ACATGGAATC TCAAGGAACT CTGTTTCCTA AGAACCAGCC AATGAGAATG 
    TACTCTAGTC TATGGAACGC TGAAGAATGG GCCACAAGGG GTGGTCTCGT 
    CAAAACCGAC TGGTCTAAAG CTCCCTTCAC TGCTTCCTAC CGCGGCTTCA 
    ACGAAGAAGC TTGCGTCGTG ATCAACGGCC AGTCTTCATG CCCTAACGTG 
    TCAGGACAAG GGAGTACTGG TTCGTGGTTG TCTCAGGAGC TAGACTCGAC 
    GGGTCAAGAA CAGATGAGAT GGGTACAGAA TAACTACATG ATTTACAATT 
    ACTGTACGGA CGCTAAAAGG TTCCCTCAAG GTCTTCCACG CGAGTGCTTA 
    GCTGCGTAAA GCTTTTAAAC AAATGATCCA AAGCCATGAA AAGTAATACT 
    ATTCTTTGAT TCATCTTATA AAGTATCTGA TGTTTGGTTA CATCTGTTTT 
    TTATTTATTC TATGTAAGTA TATTTGTATT CGAATATTGA TCAATCACTT 
    TAC

    Gene models with high sequence identity

    1. AT4G25810.1 [+] show detail - xyloglucan endotransglycosylase 6
      E-value: 0; Score: 99.91

     

    InterPro Scan Digest

    Program Description E-value
    HMMPIR Xyloglucan endotransglucosylase/hydrolase 4.1e-164
    PatternScan Glycoside hydrolase, family 16, active site 0
    superfamily Concanavalin A-like lectin/glucanase 5.4e-103
    Gene3D Concanavalin A-like lectin/glucanase, subgroup 3.2e-108
    HMMPfam Glycoside hydrolase, family 16 7.5e-61
    HMMPfam Xyloglucan endo-transglycosylase, C-terminal 1.8e-23

    See the detailed result >

    AT4G25810.1

    Model type
    Protein coding
    Short Description
    xyloglucan endotransglycosylase 6
    Curator Summary
    xyloglucan endotransglycosylase-related protein (XTR6)
    Computational Description
    xyloglucan endotransglycosylase 6 (XTR6); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: cell wall; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757), Glycoside hydrolase, family 16, active site (InterPro:IPR008263); BEST Arabidopsis thaliana protein match is: Xyloglucan endotransglucosylase/hydrolase family protein (TAIR:AT5G57560.1); Has 2255 Blast hits to 2235 proteins in 316 species: Archae - 0; Bacteria - 302; Metazoa - 0; Fungi - 455; Plants - 1384; Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR