F16039

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F16039

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F16039

Determination of introduced cDNA(s)

  • RAFL05-14-C13 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-14-C13 - Resource: pdz87481

    5 prime EST [+] show sequence

    Nucleotide sequence: RAFL05-14-C13 - 5 prime EST 
    GACTTTCTCT CCACCCTTCT CTCTCTCCTT CTGAAAGTCT CTCTCTTTGC 
    CGTCGTTAGC CTCTTCCTAC ACNTTGGGGC NTGCGATTCT TCCAATCCTC 
    CGATTTCAAT TTCATCCTCT CAATCATAGT TTGAAATCAT CGAGCTTTTA 
    CGGTGCNTGT TGGTGTTTGA CGCCGTAAAA TTCGATCCTT TTTTATACAT 
    TTGATGTTGA TTTTATCGAT AGTTTTGTGA GATCGATTTT TTAGGGTTTC 
    GAGTTTGGCG CTGACTTGAG GGTTTGATTG GATGAGAATA AGGGGTTATG 
    GGACTTGAGT CAATTGGGTT TGTCTCCCTA ATCATCGCAA ATTCCTGATT 
    TCTCAGCTCT TTGGAAGGAA TTAGGATTCG TTGATTTCGA GTTTTGTGTT 
    GTGTTGGTTG ATGAGAGAGT TGGGTTTGGT CAATTGAGGG GTTTAGGTGT 
    TGTTTTACTG TTTTGATTCT GATCATGGAT GACATTGATT CAAGCGATGG 
    TGCTGCGGCT GCACGAGCTG GTGAGATTGG CTCTATTGGG GTATCCACAC 
    CGTGGAAGCC AATTCAGCTG GTTTTTAAGC GTTATTTGCC ACAAAATGGG 
    TCTGCTAGCA AAGTTCATGT TGCCGTGAAG AAGCCGGTGG TGGTGAGACT 
    AACTAGGGAC TTGGTTGAGA CGT

    Gene models with high sequence identity

    1. AT5G35980.2 [+] show detail - yeast YAK1-related gene 1
      E-value: 0; Score: 99.55

    3 prime EST [+] show sequence

    Nucleotide sequence: RAFL05-14-C13 - 3 prime EST 
    CCAATTATAA CATACTTTTT TTTTTTGTTT ATTTGTGCAA AAAGCACAAT 
    GAATAAGCAC GTTCTGATCA GAAGCCCACA AGCCATGAAC TAAGTTTGTT 
    TCTTGTCTCA GTACAACTTT TGTTCCCACA CTTCTAACAA GAAGATTGCA 
    C

    Gene models with high sequence identity

    1. AT5G35980.1 [+] show detail - yeast YAK1-related gene 1
      E-value: 1e-75; Score: 99.33

    AT5G35980.1

    Model type
    Protein coding
    Short Description
    yeast YAK1-related gene 1
    Computational Description
    yeast YAK1-related gene 1 (YAK1); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT3G17750.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR

    AT5G35980.2

    Model type
    Protein coding
    Short Description
    yeast YAK1-related gene 1
    Computational Description
    yeast YAK1-related gene 1 (YAK1); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT3G17750.1); Has 91682 Blast hits to 90157 proteins in 2771 species: Archae - 99; Bacteria - 7981; Metazoa - 36897; Fungi - 11192; Plants - 18283; Viruses - 359; Other Eukaryotes - 16871 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR