F16223

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F16223

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F16223

Determination of introduced cDNA(s)

  • RAFL06-07-C12 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-07-C12 - Resource: pdz87549

    5 prime EST [+] show sequence

    Nucleotide sequence: RAFL06-07-C12 - 5 prime EST
    GGAAGTAGCA GTCCTCTCTT CAATTTCAAC CGGCACTTTC TTCTCTTCTT 
    CTTCTTCTTC CCAATCTTCC TCGTCTCTTT ACCTACACCT ATATATATAT
    ATATATATAT ATCTCCTTCC CTCACACACA TACCTGCACA GCTACAATAA
    TCTACTTCCC CTCTTTCAAT AACGGAATTA ATAGTAATCT AATCGGAAGA
    TTCAAGCGAG AAATCGATTT GGTTGTCTGT TAATTTGTTG GGAAATAAAT
    TGAAATAGGA GATTGATTGG ATGGTGAGAA GGCAAGAGGA GGAGAAGAAG
    GCGGAGAAGG GAATGCGTCT GGGGAAATAC GAGCTAGGGA GGACGCTCGG
    CGAGGGTAAT TTCGGTAAAG TTAAATTCGC TAAAGATACC GTCTCCGGTC
    ATTCCTTCGC CGTTAAAATC ATCGACAAGT CTCGTATCGC CGATCTCAAC
    TTCTCCTTAC AGATAAAAAG AGAGATCCGG ACTCTGAAAA TGTTGAAACA
    TCCCCACATT GTTAGATTAC ATGAGGTCTT GGCTAGCAAA ACGAAAATTA
    ATATGGTNNT GGAACTTGTT ACCCGGAGGA GAATTGTTCG ACAGAATTGT
    TTCCAACGGA AAATTAACAG GAACCTGGTG GGAAGAAAAT GTTTNAGCAG
    CTTATCGATG GAATCAGCTA CTG

    Gene models with high sequence identity

    1. AT3G17510.1 [+] show detail - CBL-interacting protein kinase 1
      E-value: 0; Score: 98.36

    3 prime EST [+] show sequence

    Nucleotide sequence: RAFL06-07-C12 - 3 prime EST
    CAATCGAGCT CCTTTTATAT ATACTTAAGA TAATAAATTA TATGAACATG 
    GATGGTGTGT TCCATATGAT AAATTATTAG AGCTATGTAT ATCTCTTCAG
    CCGAAAACAC CAACACCTAA GTTACTATCT CTTGCTCCGG CGAGGATGTG
    CCCACGTCTT TTAATAGTCT CTCGTACAAC TGTCTATATA AACATGAATC
    GCCATAAGAT TTTCTTAGCT CAACCACGTT CAGTGACGGC TTTATCTCGA
    AAACCTCAGC TGTTACTGAT AAACCAACTT GACCTTTCTG GTTTCTTTCT
    TCTTGTTTTA CTCTTAACTT GGCATGTTTC TTTTGTACAC TGAATCCCAT
    TTCTGTAACG GCTGTTTCGA TTTTCTCCAG TAAATCTTTT GCTGAGCTAT
    TTGAAGTGAA TCTTATTCTC CTCTCTGATA CATTCTCTTG TTCAAAGAAA
    CCGGACAGGT CAAGAAAGGA AGACATTCCG ATTAACTGAA ACGCATTGAT
    GATGGTCGGT GAATCACTGC CCTTCCCTTC TTCTGATCCG AGTTCTTGGA
    TTGAGAAAGC ATCATCGTCT GTGTCAACTT CTTCTTCGTC ATCATCATCG
    GGAATTGAAG GAATGTACTC AAGTTTGAAC CACTCGCTGG CTTTAATACC
    CACAACTGTG ATCCTCGTGA CTGGATTTGG ATCAAGCATT CTCTTAAT

    Gene models with high sequence identity

    1. AT3G17510.1 [+] show detail - CBL-interacting protein kinase 1
      E-value: 0; Score: 100.00

    AT3G17510.1

    Model type
    Protein coding
    Short Description
    CBL-interacting protein kinase 1
    Curator Summary
    Encodes a CBL-interacting protein kinase. Specifically interacts with ECT1 and ECT2.
    Computational Description
    CBL-interacting protein kinase 1 (CIPK1); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), NAF/FISL domain (InterPro:IPR018451), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), NAF domain (InterPro:IPR004041), CBL-interacting protein kinase (InterPro:IPR020660), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: CBL-interacting protein kinase 17 (TAIR:AT1G48260.1); Has 128786 Blast hits to 126868 proteins in 3954 species: Archae - 151; Bacteria - 15250; Metazoa - 47593; Fungi - 12814; Plants - 31341; Viruses - 523; Other Eukaryotes - 21114 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR