F16223

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F16223

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F16223

Determination of introduced cDNA(s)

  • RAFL06-07-C12 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-07-C12 - Resource: pdz87549

    5 prime EST [+] show sequence

    Nucleotide sequence: RAFL06-07-C12 - 5 prime EST 
    GGAAGTAGCA GTCCTCTCTT CAATTTCAAC CGGCACTTTC TTCTCTTCTT 
    CTTCTTCTTC CCAATCTTCC TCGTCTCTTT ACCTACACCT ATATATATAT 
    ATATATATAT ATCTCCTTCC CTCACACACA TACCTGCACA GCTACAATAA 
    TCTACTTCCC CTCTTTCAAT AACGGAATTA ATAGTAATCT AATCGGAAGA 
    TTCAAGCGAG AAATCGATTT GGTTGTCTGT TAATTTGTTG GGAAATAAAT 
    TGAAATAGGA GATTGATTGG ATGGTGAGAA GGCAAGAGGA GGAGAAGAAG 
    GCGGAGAAGG GAATGCGTCT GGGGAAATAC GAGCTAGGGA GGACGCTCGG 
    CGAGGGTAAT TTCGGTAAAG TTAAATTCGC TAAAGATACC GTCTCCGGTC 
    ATTCCTTCGC CGTTAAAATC ATCGACAAGT CTCGTATCGC CGATCTCAAC 
    TTCTCCTTAC AGATAAAAAG AGAGATCCGG ACTCTGAAAA TGTTGAAACA 
    TCCCCACATT GTTAGATTAC ATGAGGTCTT GGCTAGCAAA ACGAAAATTA 
    ATATGGTNNT GGAACTTGTT ACCCGGAGGA GAATTGTTCG ACAGAATTGT 
    TTCCAACGGA AAATTAACAG GAACCTGGTG GGAAGAAAAT GTTTNAGCAG 
    CTTATCGATG GAATCAGCTA CTG

    Gene models with high sequence identity

    1. AT3G17510.1 [+] show detail - CBL-interacting protein kinase 1
      E-value: 0; Score: 98.36

    3 prime EST [+] show sequence

    Nucleotide sequence: RAFL06-07-C12 - 3 prime EST 
    CAATCGAGCT CCTTTTATAT ATACTTAAGA TAATAAATTA TATGAACATG 
    GATGGTGTGT TCCATATGAT AAATTATTAG AGCTATGTAT ATCTCTTCAG 
    CCGAAAACAC CAACACCTAA GTTACTATCT CTTGCTCCGG CGAGGATGTG 
    CCCACGTCTT TTAATAGTCT CTCGTACAAC TGTCTATATA AACATGAATC 
    GCCATAAGAT TTTCTTAGCT CAACCACGTT CAGTGACGGC TTTATCTCGA 
    AAACCTCAGC TGTTACTGAT AAACCAACTT GACCTTTCTG GTTTCTTTCT 
    TCTTGTTTTA CTCTTAACTT GGCATGTTTC TTTTGTACAC TGAATCCCAT 
    TTCTGTAACG GCTGTTTCGA TTTTCTCCAG TAAATCTTTT GCTGAGCTAT 
    TTGAAGTGAA TCTTATTCTC CTCTCTGATA CATTCTCTTG TTCAAAGAAA 
    CCGGACAGGT CAAGAAAGGA AGACATTCCG ATTAACTGAA ACGCATTGAT 
    GATGGTCGGT GAATCACTGC CCTTCCCTTC TTCTGATCCG AGTTCTTGGA 
    TTGAGAAAGC ATCATCGTCT GTGTCAACTT CTTCTTCGTC ATCATCATCG 
    GGAATTGAAG GAATGTACTC AAGTTTGAAC CACTCGCTGG CTTTAATACC 
    CACAACTGTG ATCCTCGTGA CTGGATTTGG ATCAAGCATT CTCTTAAT

    Gene models with high sequence identity

    1. AT3G17510.1 [+] show detail - CBL-interacting protein kinase 1
      E-value: 0; Score: 100.00

    AT3G17510.1

    Model type
    Protein coding
    Short Description
    CBL-interacting protein kinase 1
    Curator Summary
    Encodes a CBL-interacting protein kinase. Specifically interacts with ECT1 and ECT2.
    Computational Description
    CBL-interacting protein kinase 1 (CIPK1); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), NAF/FISL domain (InterPro:IPR018451), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), NAF domain (InterPro:IPR004041), CBL-interacting protein kinase (InterPro:IPR020660), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: CBL-interacting protein kinase 17 (TAIR:AT1G48260.1); Has 128786 Blast hits to 126868 proteins in 3954 species: Archae - 151; Bacteria - 15250; Metazoa - 47593; Fungi - 12814; Plants - 31341; Viruses - 523; Other Eukaryotes - 21114 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR