F16316

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F16316

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F16316

Determination of introduced cDNA(s)

RAFL06-79-G07 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-79-G07 - Resource: pda03760

full reading [+] show sequence

GCCATTACCG GGGAGAGAGT GAAATTAGGG CTGAGCGAGA GAGATTCTGA 
AATAATTTCT TTTACGGCGG TGAAGATGAC TGAGCTAACG TCGGCGATGG 
ACATTGACGT AGACGAAATT CAGCCTCGCA AGCCGATAAA CAAGGGCAAA 
GACGTCGTCG GTTTTGGACC TCCGCCGCAG AGTAAGGCGA CGCCTTGGGT 
TGAGAAGTAT CGACCTCAGT CGCTTGATGA CGTGGCTGCA CATCGTGACA 
TTATTGATAC GATTGATAGG CTGACCAATG AGAACAAATT GCCCCATCTT 
CTGTTGTATG GTCCTCCCGG TACTGGCAAA ACATCCACCA TTCTAGCTGT 
TGCCCGGAAA CTATATGGAC CAAAGTACCG GAATATGATT CTTGAACTGA 
ACGCATCAGA CGATAGAGGA ATCGATGTTG TAAGGCAGCA GATTCAAGAT 
TTCGCTAGCA CGCAGAGTTT CTCTTTAGGA AAATCTTCGG TGAAGTTGGT 
TTTGCTAGAT GAAGCAGATG CCATGACAAA AGATGCTCAG TTTGCCTTGC 
GTAGAGTGAT TGAGAAATAC ACTAAGAGTA CTAGGTTTGC GCTCATTGGA 
AACCATGTCA ATAAGATCAT CCCAGCTTTG CAGTCGAGAT GTACTCGATT 
TAGATTTGCC CCTCTTGATG GAGTTCATAT GAGTCAACGT CTTAAACATG 
TAATAGAAGC TGAAAGGCTT GTTGTAAGTG ACTGTGGTTT GGCAGCTCTT 
GTACGGCTGA GCAATGGGGA CATGAGAAAA GCATTGAACA TTTTGCAGTC 
AACGCATATG GCGTCAAAGG AAATTACAGA GGAAGAGTCA AAGCAAATTA 
CAGAGGAAGA CGTTTACCTC TGCACCGGAA ACCCATTGCC CAAGGACATT 
GAGCAGATAT CTCACTGGCT TCTGAATAAA CCATTTGATG AGTGCTACAA 
AGACGTTTCA GAAATCAAGA CGAGAAAAGG ACTTGCCATT GTTGATATCG 
TCAAAGAGAT TACCTTGTTT ATTTTTAAAA TCAAGATGCC TTCCGCTGTC 
AGAGTTCAAC TGATAAACGA TTTGGCAGAC ATTGAGTACA GATTAAGTTT 
TGGTTGCAAC GACAAACTGC AGCTTGGAGC TATCATTTCT ACTTTCACAC 
ATGCCCGGTC TATCATTGTT GGTGCAGCAA AGTAAACCAT GTTTTTACCA 
TTTTGGAACC CGCAGTAGCT CGCCACCTTA ACAAACCGCT AGAATGTTTT 
ATCTCCGTGA TGTTTTCCTG ATAGTCTCTG TACATTTTGT GGCGTTTGTG 
ACCAATAGGC TTGCTTTTTA TTTCTTATGA AGAGTTTCAA TGCCACCTTG 
TTATCCTCTT CTCATCTCCT CGAATTTGTA ACTTTCAATT TCTTGATCAA 
ATTATGTTTT AATGAAAAAA AAAAAAAAAA

Gene models with high sequence identity

AT1G77470.1 [+] show detail - replication factor C subunit 3
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
superfamily	P-loop containing nucleoside triphosphate hyd	4.4e-53
superfamily	DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal	4.4e-26
HMMSmart	ATPase, AAA+ type, core	1.3e-11
Gene3D	no description	5.8e-51
Gene3D	no description	4.6e-13
Gene3D	no description	4.7e-20
HMMPfam	Replication factor C	4.3e-25
HMMPfam	ATPase, AAA-type, core	5.2e-16
HMMPanther	REPLICATION FACTOR C / DNA POLYMERASE III GAM	1.1e-48

See the detailed result >

AT1G77470.1

Model type: Protein coding
Short Description: replication factor C subunit 3
Curator Summary: Encodes a protein with high homology to the Replication Factor C, Subunit 3 (RFC3) of yeast and other eukaryotes. rfc3 mutants are hypersensitive to salicylic acid and exhibit enhanced induction of PR genes and resistance against virulent oomycete Hyaloperonospora arabidopsidis Noco2. The enhanced pathogen resistance in the mutant is NPR1-independent.
Computational Description: replication factor C subunit 3 (RFC3); FUNCTIONS IN: in 6 functions; INVOLVED IN: negative regulation of defense response; LOCATED IN: DNA replication factor C complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), Replication factor C (InterPro:IPR013748), DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal (InterPro:IPR008921); BEST Arabidopsis thaliana protein match is: ATPase family associated with various cellular activities (AAA) (TAIR:AT1G21690.1); Has 17584 Blast hits to 17541 proteins in 2810 species: Archae - 637; Bacteria - 9895; Metazoa - 902; Fungi - 991; Plants - 392; Viruses - 88; Other Eukaryotes - 4679 (source: NCBI BLink).
Link: InterPro Scan - TAIR