F16516

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	cauline leaf (PO:0000013)	present in fewer numbers in organism (PATO:0001997) (Cauline leaf::Number::few)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) increased width (PATO:0000600) (Rosette leaf::Shape::wide)
	fruit (PO:0009001)	abnormal (PATO:0000460) (Silique::Other) decreased length (PATO:0000574) (Silique::Shape::short)
	stem (PO:0009047)	decreased thickness (PATO:0000592) (Stem::Shape::thin) abnormal (PATO:0000460) (Stem::Shape::zigzag)
T2
	cauline leaf (PO:0000013)	decreased size (PATO:0000587) (Cauline leaf::Shape::small)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) increased width (PATO:0000600) (Rosette leaf::Shape::wide) abnormal (PATO:0000460) (Rosette leaf::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F16516

Determination of introduced cDNA(s)

RAFL04-16-A19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-16-A19 - Resource: pda00605

full reading [+] show sequence

ACCATCTCCT TCAGATCCAC ACACTCTCTC TTATATCTCT CCGGCGAAAA 
CTTTCCGATC ACCGACAAAA AAAAAAAATG GTTGCAGACG CAAACGGTTC 
ATCATCAAGC TCATTTAACT TCCTAATCTA CGGTAAAACC GGATGGATCG 
GTGGTTTACT CGGTAAACTC TGCGAAGCTC AAGGAATCAC TTACACTTAC 
GGCTCCGGTC GTCTTCAAGA TCGTCAATCG ATCGTCGCCG ACATCGAATC 
CGTGAAACCT AGCCACGTGT TCAACGCTGC TGGAGTCACC GGTCGTCCTA 
ATGTTGATTG GTGCGAATCT CACAAAGTTG AGACGATTCG TACTAATGTC 
GCCGGAACCC TAACTCTCGC TGACATTTGC AGAGAGAAAG GACTTGTTCT 
GATCAATTAC GCTACGGGTT GTATATTTGA GTATGATTCG GGTCATCATC 
TCGGGTCGGG TATTGGATTC AAGGAGGAGG ATACTCCTAA TTTCACCGGA 
TCTTTCTACT CTAAAACCAA AGCTATGGTG GAGGAGCTGC TCAAGAACTA 
TGAAAATGTA TGCACGCTAA GAGTGCGAAT GCCGATTTCA TCGGATCTAA 
CAAACCCGAG AAACTTCATC ACGAAGATTG CTCGGTATGA GAAAGTTGTG 
GACATCCCAA ACTCGATGAC AATCCTCGAT GAGCTTCTCC CGATATCAAT 
CGAAATGGCG AAGAGGAACT TAACCGGGAT CTACAATTTC ACTAACCCGG 
GTGTTGTGAG CCACAACGAG ATCTTGGAGA TGTACAGAGA CTACATTGAC 
CCGAGTTTTA CTTGGAAGAA CTTCACATTG GAGGAACAAG CTAAAGTGAT 
TGTGGCGCCA AGGAGTAACA ATGAGCTTGA TGCAACTAAG TTGAAGACTG 
AGTTCCCTGA GTTGATGTCT ATCAAAGAGT CTCTGATCAA GTTCGTGTTT 
GAGCCCAACA AGAAGACTGA AGTTAAAGCT TGAAATGTGG TTTTGTAAGG 
TAAACGGTTC TTAACCCCAA AAAAACAAAT CAAATGAAAG ACAAAAAAAG 
TTTGGGTTTT TAAAAGAAGT ATCTTTTTTT TTTTTTGGGT TTATGGGCTG 
AAAAAATTGT TGTGTTTTTT GTATTTTATT TTTTTGTTTT TCTTTTTCCC 
AATGTTGTTG TATTGTTAAA ATAAACTTTT GTTTCATTAC AAATAAGAAA 
TGTACTATTT TGCAAAAAAA AAAAAGTAAT

Gene models with high sequence identity

AT1G63000.1 [+] show detail - nucleotide-rhamnose synthase/epimerase-reductase
E-value: 0; Score: 99.84

InterPro Scan Digest

Program	Description	E-value
HMMPfam	dTDP-4-dehydrorhamnose reductase	7.1e-16
superfamily	NAD(P)-binding domain	2.5e-24
HMMPanther	NAD DEPENDENT EPIMERASE/DEHYDRATASE	3.6e-224
HMMPanther	NAD DEPENDENT EPIMERASE/DEHYDRATASE	3.6e-224
Gene3D	NAD(P)-binding domain	1.3e-19

See the detailed result >

AT1G63000.1

Model type: Protein coding
Short Description: nucleotide-rhamnose synthase/epimerase-reductase
Computational Description: nucleotide-rhamnose synthase/epimerase-reductase (NRS/ER); FUNCTIONS IN: UDP-4-keto-rhamnose-4-keto-reductase activity, dTDP-4-dehydrorhamnose reductase activity, UDP-4-keto-6-deoxy-glucose-3,5-epimerase activity, dTDP-4-dehydrorhamnose 3,5-epimerase activity; INVOLVED IN: dTDP-rhamnose biosynthetic process, UDP-rhamnose biosynthetic process; LOCATED IN: soluble fraction, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), dTDP-4-dehydrorhamnose reductase (InterPro:IPR005913); BEST Arabidopsis thaliana protein match is: rhamnose biosynthesis 1 (TAIR:AT1G78570.1); Has 1363 Blast hits to 1363 proteins in 432 species: Archae - 58; Bacteria - 688; Metazoa - 9; Fungi - 22; Plants - 263; Viruses - 5; Other Eukaryotes - 318 (source: NCBI BLink).
Link: InterPro Scan - TAIR