F16612

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F16612

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F16612

Determination of introduced cDNA(s)

RAFL05-14-N10 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-14-N10 - Resource: pda07316

full reading [+] show sequence

CTTCGTCTTC TTCTTCAGTT TTAGGTTACG ATCGAAGCAA AAGCGGCGCA 
TCTGAATCCC AAACGAGTGA CGATGACGAT CGATTCGCAG CAAAAAACGA 
GCAAATTCAG ATGGGGGGAA ATGGACGAAG ACGAAGATCT GGATTTCTTG 
CTCCCTCCCA AGCAGGTGAT TGGTCCAGAT GAGAATGGTT TGAAGACGAC 
GATCGAGTAC AAATTCAACG ATGAAGAAAA TAAGGTTAAG ATAACGACTA 
GGACACGTGT CCGCAAGCTA GCTTCTGCTC GACTCAACAA ACGAGCCATG 
GAGAGGAGGA ACTGGCCTAA GTTCGGAGAC GCAGCCAATG AGGAAGCTGG 
TAGCCATCTC ACTATGGTTT CTACCGAAGA GATCCTTCTC GAACGACCCC 
GAGCTCCTGG TACCAAAGCG GATGAATCAA AGGCAACAGG AGATGGCTTG 
TCTCAGCTGG GTAAAGGTGG TGCAGTTCTC ATGGTGTGCA GGATATGCCA 
CAAGAAAGGA GATCACTGGA CATCAAAATG TCCATACAAG GATCTAGCTG 
CACCAACCGA TGTCTTCATT GACAAGCCAC CCACAGGGGA ATCATCTACC 
ATGTCTGCTG CACCTGGAAC TGGCAAGGCC GCGTATGTCC CGCCTAGCAT 
GAGAGCAGGT GCAGACAGAA GCGCTGTGGG TTCAGACATG AGGAGGAGGA 
ACGATGAGAA CTCTGTGCGT GTAACCAATC TGTCCGAGGA TACCCGTGAA 
CCTGACTTGA TGGAGCTGTT CCACCCGTTT GGAGCTGTCA CACGTGTCTA 
TGTGGCCATT GATCAGAAAA CTGGAGTGAG CAGAGGATTT GGTTTCGTCA 
ATTTCGTGAG CAGAGAAGAC GCTCAAAGAG CAATCAACAA ATTGAATGGT 
TATGGTTATG ATAACCTCAT CCTCAGGGTT GAATGGGCAA CTCCAAGACC 
AACCTAGAAA GAAATGTCTG ATGTTGAGAC CTTAAAACTC TTCTCATTCT 
CGTCTTTCTT GTTATGGATT TTTGTTTATC GACCAGTTTG TTTGTTGGTT 
TGGTTTCTGT ATGAATAGAT GAGAATTTGT TCAATTTCTC TTTAATACAT 
AAGGCATGCT TTTT

Gene models with high sequence identity

AT3G11400.1 [+] show detail - eukaryotic translation initiation factor 3G1
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	EUKARYOTIC TRANSLATION INITIATION FACTOR 3	4.8e-137
superfamily	RNA-binding domain, RBD	1.4e-28
HMMPfam	eIF3g	2.6e-38
HMMPfam	RNA recognition motif, RNP-1	7.3e-19
HMMPIR	Translation initiation factor 3, RNA-binding subunit	7.9e-106
ProfileScan	RNA recognition motif, RNP-1	18.871
Gene3D	Nucleotide-binding, alpha-beta plait	2.8e-27
HMMSmart	RNA recognition motif, RNP-1	4.3e-23

See the detailed result >

AT3G11400.1

Model type: Protein coding
Short Description: eukaryotic translation initiation factor 3G1
Curator Summary: One of the 2 genes that code for the G subunit of eukaryotic initiation factor 3 (EIF3).
Computational Description: eukaryotic translation initiation factor 3G1 (EIF3G1); FUNCTIONS IN: RNA binding, translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: eukaryotic translation initiation factor 3 complex, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Translation initiation factor 3, RNA-binding subunit (InterPro:IPR017334), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 3G2 (TAIR:AT5G06000.1); Has 999045 Blast hits to 996617 proteins in 36057 species: Archae - 21687; Bacteria - 600727; Metazoa - 203286; Fungi - 24712; Plants - 56079; Viruses - 69236; Other Eukaryotes - 23318 (source: NCBI BLink).
Link: InterPro Scan - TAIR