F17441

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F17441

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F17441

Determination of introduced cDNA(s)

  • RAFL05-17-J24 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-17-J24 - Resource: pda07389

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-17-J24 - full reading 
    AATTTGGAAA AAAATCAGAG TAGGTTAAAA ATGAATTGGG CAAAATTCCG 
    TGAAACTGGG AGCCCAGAAG ACACCGACAT GTCTTCTACT CCGATCTCGT 
    CCGACACGAC GGCGGTGTCC AAAGTGATCG ATCCAAATTA CGTATTAATG 
    GTTGCTGATT TCTTCAAAGC TATTTCCCCA GACGAATCTT GCAACGATTT 
    CACCTCTTTC GACTCTTTCT CCGTCTTATT TCAAAACAAT ACCAGAGCTC 
    TCTCCATCGC ACGCGGCCGT GTCTCGTGCT CCGTCACCGT CACGCCAGGC 
    ATATCCAATT TCTTTAAGGG GTTACATGGA GGAGCGGTGG CATCAATTGC 
    AGAGAGAGTA GCGATGGCTT GTGTGAAAAC TGTTGTGTCT GAAGACAAAC 
    ATCTGTTCAT TGGTGAATTG AGTATGTCTT ATCTCTCTTC TGCTCCTATT 
    TCGAGTGAAT TGTTGGTGGA GGGAACGGTG GTGAGGACTG GGAGGAATCT 
    GTCGGTGGTG ACTGTTGAGT TCAAGATCAA GGAGACCATG AAAGTCACTT 
    ACCTATCTCG TGCTACTTTT TACCATTCTC CCATCTCTAA GCTTTAAAGC 
    TTTTTCACAT GCTCAGTGAT CTTTTGCTGA TCTATTTACA TTCTTCTGTT 
    CAATAAAACA AGATTCTGTA TACAGATATT ACTGTCTTTA ATCAGTTTAT 
    ACAACACTAC TACATTATCA TCCAAC

    Gene models with high sequence identity

    1. AT3G61200.1 [+] show detail - Thioesterase superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Thioesterase/thiol ester dehydrase-isomerase 1.1e-19
    HMMPanther THIOESTERASE SUPERFAMILY MEMBER-RELATED 5.7e-45
    HMMPfam Thioesterase superfamily 1.7e-12
    Gene3D no description 6.4e-09

    See the detailed result >

    AT3G61200.1

    Model type
    Protein coding
    Short Description
    Thioesterase superfamily protein
    Computational Description
    Thioesterase superfamily protein; CONTAINS InterPro DOMAIN/s: Thioesterase superfamily (InterPro:IPR006683); BEST Arabidopsis thaliana protein match is: Thioesterase superfamily protein (TAIR:AT1G04290.1); Has 296 Blast hits to 296 proteins in 69 species: Archae - 1; Bacteria - 37; Metazoa - 61; Fungi - 14; Plants - 161; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR