F17721

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F17721

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F17721

Determination of introduced cDNA(s)

  • RAFL09-84-D08 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-84-D08 - Resource: pda09964

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-84-D08 - full reading 
    GAGCTTATCA TCGCCAACCA GTGCTTGTAG CTCGTCCAGA TGTTACTCCT 
    CGGGATTATC GTTTCCGATT GGATTTGGAT CGAATCCCAT CAATGTGGGA 
    TTGGTTTGTT ACCCAAAAAG ATACAGTATT GCTGCTCGGA AGTTCGTAGT 
    GGCTTGCTCC TCCTCCTCTT CCGATCCACT TTTGGTTAAG GCTGCAAAAG 
    GGCAAGCCAT AAGTCGTCCT CCAGCTTGGA TGATGAGGCA AGCAGGAAGG 
    TATATGGCTG TTTACCAAAA GCTCGCCAAG AAACATCCGT CCTTCAGAGA 
    GAGATCAGAG AACACTGATC TAATAGTGGA AATCTCTTTG CAGCCTTGGC 
    AAGCATTCAG ACCAGACGGT GTCATCATTT TCTCTGACAT CCTCACCCCT 
    TTACCTGCAT TCGGTGTCCC TTTTGATATT GAAGAGGTAA AAGGTCCTGT 
    AATCCAATCT CCTATCCGAA CTGAAGAAGA TATGAAGAGA TTACATCCCA 
    TTGATTTCGA GAAACTACAG TTTGTTGGAG ATTCTCTCAA GATTTTGAGA 
    CGAGAGGTTG GGGAACATGC TGCGGTGTTG GGTTTCGTTG GAGCGCCTTG 
    GACAATTGCA ACATATATTG TTGAAGGAGG AACAACTCGA ACATATACAG 
    TCATAAAGAA TATGTGCCAC ACTGCACCAG ATGTATTGAG AGCTCTATTA 
    TCTCATTTAA CCAAGGCCAT TACCGAGTAT GTGGTTTACC AAGTTGAGCA 
    CGGAGCTCAC TGCATACAAA TATTCGATTC CTGGGGTGGC CAACTGACTC 
    CGGAGATGTG GGAGCGCTGG TCCAAACCAT ACATTGAAGA GATCATACAT 
    GCTGTAAAGA AAAGATGTCC AGATACGCCG ATAGTTTTCT ACATCAATGG 
    AAATGGTGGC CTTCTTGAGC GAATGAAAGG AACTGGAGCT GATGTTATTG 
    GACTTGACTG GACTGTAGAT ATGGCTGATG GAAGGAGGCG ATTGGGAAGC 
    GAGGTAAGTG TGCAGGGAAA TGTTGATCCA GCTTACCTAT TCTCTCCGCT 
    TCCTGCTTTG ACCGAAGAAA TTGAAAGAGT TGTGAAGTGT GCTGGACCAA 
    AAGGGCATAT TCTCAATCTA GGACACGGTG TCTTGGTAGG GACACCAGAG 
    GAAGCCGTGG CTCATTTCTT TGAAACCGCT AGAAACTTGG ATTACCAAAC 
    ACTTTTCCAA AATCATGTTC CTGCAGAAAA AGCTGAACCT GAATTGGTTG 
    TCTGAGAAAT GGTGACTAGA CAAGTGCCTA CGCCGAAGAA TTTGCTGTTT 
    AAGTTTTGTG AACATATGTC TGAATCTCTT AAACTTGGTG CAGGAATGAG 
    AGAAAAAGTT CCATGTCTGA CCCTTAATCG ATGCTAGAGT TGGTAACTTG 
    CTATGAGATA TATGCGAAGC TGTCCAGTTT TTGTTTGGCT TGCTTGAGGA 
    TTTCCAATCT TCTGGACCAA GCTCTGCTTA ACGTTTAACA ATGTATTGAG 
    TTGCTCCTAG GCTTCAAATG TTGCTGCTTC TTTTGGAGAT ATGACTCTGG 
    TTAAAGTTTA ACCAAACATT CATTTATCTG GTTAATCTCA AACCTTTGCT 
    AT

    Gene models with high sequence identity

    1. AT3G14930.2 [+] show detail - Uroporphyrinogen decarboxylase
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily UROD/MetE-like 3.6e-114
    HMMTigr Uroporphyrinogen decarboxylase HemE 1.5e-203
    HMMPfam Uroporphyrinogen decarboxylase (URO-D) 1.9e-111
    HAMAP Uroporphyrinogen decarboxylase HemE 41.135
    Gene3D no description 2.4e-116
    PatternScan Uroporphyrinogen decarboxylase (URO-D) 0
    PatternScan Uroporphyrinogen decarboxylase (URO-D) 0
    HMMPanther Uroporphyrinogen decarboxylase HemE 3.7e-132
    HMMPanther METHYLTETRAHYDROFOLATE:HOMOCYSTEINE METHYLTRA 3.7e-132

    See the detailed result >

    AT3G14930.2

    Model type
    Protein coding
    Short Description
    Uroporphyrinogen decarboxylase
    Computational Description
    HEME1; FUNCTIONS IN: uroporphyrinogen decarboxylase activity; INVOLVED IN: response to cadmium ion; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Uroporphyrinogen decarboxylase HemE (InterPro:IPR006361), Uroporphyrinogen decarboxylase (URO-D) (InterPro:IPR000257); BEST Arabidopsis thaliana protein match is: Uroporphyrinogen decarboxylase (TAIR:AT2G40490.1); Has 7323 Blast hits to 7320 proteins in 2007 species: Archae - 103; Bacteria - 3942; Metazoa - 236; Fungi - 136; Plants - 121; Viruses - 0; Other Eukaryotes - 2785 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR