F17932

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	rosette leaf (PO:0000014)	upturned (PATO:0002031) (Rosette leaf::Shape::hyponastic) increased width (PATO:0000600) (Rosette leaf::Shape::wide) present in fewer numbers in organism (PATO:0001997) (Rosette leaf::Number::few) abnormal (PATO:0000460) (Rosette leaf::Others)
T2
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	cauline leaf (PO:0000013)	abnormal (PATO:0000460) (Cauline leaf::Others)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) upturned (PATO:0002031) (Rosette leaf::Shape::hyponastic) abnormal (PATO:0000460) (Rosette leaf::Others) increased width (PATO:0000600) (Rosette leaf::Shape::wide) present in fewer numbers in organism (PATO:0001997) (Rosette leaf::Number::few) abnormal (PATO:0000460) (Rosette leaf::Others)
	fruit (PO:0009001)	abnormal (PATO:0000460) (Silique::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F17932

Determination of introduced cDNA(s)

RAFL09-21-K18 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-21-K18 - Resource: pda08029

full reading [+] show sequence

AAAACCCTAA AAAATCCAAC CAGAAGGGTA GAAGCTCTCT CGCCGACAAT 
TACCGGCTAC AAGGTTTCTC TGCTCGTCAA CGTTCTCTGA ATTAGTGGTA 
TTGAAAGATG AGCTTATCTC AGAATGCTCC GAAAAGTAAG GGTATTAAAA 
GAGAGGAGCT CAAGAAACAG TACGAAGATG TTGAAGATGA GGAAGAGATT 
GGGTCCGATG ATGATCTCAC TAGGGGAAAG AGAAGAAAGA CAGAGAAGGA 
GAAGCAGAAG CTAGAAGAAT CGGAACTGGT TGAAATGAAA AAGCTTGAGA 
ATTTGATATT CGGGTCACTC TACTCTCCTG TTACGTTTGG TAAGGAAGAA 
GAAGAAGATG GTTCGGCTTT GTTTCATGTA GACCGTTCTG CTGTGAGGCA 
GATTCCTGAC TACGAGGATG ATGGTGATGA TGATGAAGAG CTTTCTGATG 
AAGAGAATGG TCAAGTTGTG GCAATTAGAA AGGGAGAAGC TGCCTGGGAG 
GATGAAGAAG AGAAACAGAT AAACGTTGAT ATAGCTAGTG TCAACCGTCT 
AAGGAAGCTA AGGAAAGAGG AGAATGAGGG TTTGATCTCT GGGTCTGAGT 
ACATTGCAAG GCTGAGGGCT CATCATGCTA AGCTAAACCC GGGGACTGAT 
TGGGCTCGGC CAGATTCTCA AATAGTTGAT GGAGAGTCTT CAGATGATGA 
TGATACTCAG GATGGAGGAG TTGATGATAT CCTTCGAACG AATGAAGATC 
TTGTGGTGAA GTCTCGTGGT AACAAGCTGT GTGCTGGTCG TCTTGAATAC 
TCTAAGCTTG TGGATGCCAA TGCAGCGGAT CCTTCAAATG GTCCAATAAA 
CTCTGTCCAC TTCCATCAGA ACGCTCAGCT GCTTCTCACT GCTGGATTGG 
ATCGACGGTT AAGGTTTTTC CAGATTGATG GAAAGAGGAA CACCAAGATC 
CAGAGCATTT TTCTTGAGGA CTGTCCCATT CGTAAAGCGG CTTTCTTGCC 
CAATGGCTCT CAGGTCATTG TCTCCGGAAG AAGAAAGTTC TTTTACAGCT 
TTGATTTGGA GAAGGCAAAG TTTGACAAAA TTGGCCCTTT GGTTGGTAGA 
GAGGAGAAAA GCTTGGAATA TTTCGAGGTG TCACAAGACT CTAACACCAT 
AGCTTTTGTT GGCAACGAAG GTTATATCTT ACTTGTGTCT ACAAAAACAA 
AAGAGCTGAT AGGAACCCTA AAGATGAATG GTTCAGTTAG GTCTTTAGCA 
TTTAGTGAAG ATGGGAAGCA TTTGCTGAGC TCAGGAGGTG ACGGGCAAGT 
CTATGTCTGG GATCTGAGAA CAATGAAATG CTTATACAAA GGCGTGGATG 
AAGGCAGCAC TTGTGGCACT TCTCTTTGCA GTTCGCTTAA CGGAGCATTG 
TTTGCTTCTG GAACCGACAG AGGAATCGTA AACATTTACA AGAAATCTGA 
GTTTGTGGGA GGCAAAAGAA AGCCGATAAA GACAGTGGAC AATCTCACAT 
CCAAGATAGA TTTCATGAAG TTCAACCATG ATGCTCAGAT TCTAGCTATA 
GTCTCTACAA TGAACAAAAA CAGTGTAAAG CTAGTCCATG TTCCATCCCT 
AACCGTCTTC TCAAACTGGC CGCCACCAAA CAGCACAATG CATTACCCTC 
GCTGCCTAGA CTTCAGCCCC GGAAGTGGCT TCATGGCTAT GGGGAACGCT 
GCCGGAAAAG TTTTGCTGTA TAAACTCCAT CATTACCAGA ATGCTTGAAG 
TGGTCTTTAA CAAGGGCAGT TTTGGGATTG TTGTGTTTCC TCTTTTTTTG 
TCGCAAGTAC TCTTTATGTT ATCAATTTTC CTATCCAATT ATCGATCAAT 
GAAAAATTTT CTTTCTGATT G

Gene models with high sequence identity

AT5G14050.1 [+] show detail - Transducin/WD40 repeat-like superfamily protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
ProfileScan	WD40 repeat 2	13.683
ProfileScan	WD40-repeat-containing domain	12.657
PatternScan	WD40 repeat, conserved site	0
Coil	coiled-coil	0
HMMPanther	WD-REPEAT PROTEIN-RELATED	9.9e-229
Gene3D	WD40/YVTN repeat-like-containing domain	1.3e-32
HMMSmart	WD40 repeat	1.2
HMMSmart	WD40 repeat	120
HMMSmart	WD40 repeat	0.000000011
HMMSmart	WD40 repeat	98
HMMSmart	WD40 repeat	190
HMMPfam	WD40 repeat, subgroup	0.01
HMMPfam	WD40 repeat, subgroup	0.00000065
superfamily	WD40 repeat-like-containing domain	4.8e-45

See the detailed result >

AT5G14050.1

Model type: Protein coding
Short Description: Transducin/WD40 repeat-like superfamily protein
Computational Description: Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: TBP-associated factor 5 (TAIR:AT5G25150.1); Has 6115 Blast hits to 4690 proteins in 400 species: Archae - 26; Bacteria - 2036; Metazoa - 1593; Fungi - 1149; Plants - 369; Viruses - 2; Other Eukaryotes - 940 (source: NCBI BLink).
Link: InterPro Scan - TAIR