F18820

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F18820

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F18820

Determination of introduced cDNA(s)

  • RAFL09-30-D21 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-30-D21 - Resource: pda08190

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-30-D21 - full reading
    CTTCTCATTT TTCCATTCTT TAAGTCTTCC CGTTGATTCA TTCCGATCTG 
    AAATCTCTCT CTAGATTTCT CTATTTTTCG AATTTTAAAT GAACGATTTG
    TTTTCCAGCT CATTCTCTCG CTTCCGCAGC GGAGAACCAT CCCCTCGCCG
    AGACGTTGCC GGCGGTGGCG ACGGAGTTCA GATGGCGAAT CCCGCGGGAT
    CAACCGGTGG TGTGAACCTC GACAAGTTCT TCGAAGATGT TGAATCTGTG
    AAAGAAGAGC TAAAGGAGCT AGATCGGCTC AACGAAACAC TCTCTTCATG
    TCACGAGCAG AGCAAGACGC TTCACAATGC TAAAGCCGTT AAAGATCTCC
    GGTCTAAAAT GGACGGTGAC GTTGGAGTCG CGTTGAAGAA GGCGAAGATG
    ATTAAAGTTA AACTCGAGGC GCTAGATCGT GCCAATGCTG CTAATCGGAG
    TCTCCCTGGC TGTGGACCTG GTTCTTCCTC CGATCGAACC AGGACCTCTG
    TCCTCAATGG TCTCAGGAAG AAATTGATGG ACTCTATGGA TAGTTTCAAC
    CGATTGAGGG AGCTTATCTC GTCCGAGTAT AGAGAAACTG TACAGAGGAG
    GTACTTCACC GTCACCGGCG AGAATCCGGA TGAACGAACC CTAGATCGAC
    TGATTTCCAC TGGAGAGAGT GAGAGATTCT TGCAGAAAGC AATACAAGAA
    CAAGGAAGAG GAAGGGTGTT AGACACCATT AACGAGATTC AAGAAAGGCA
    TGATGCGGTT AAAGACATTG AGAAGAATCT CAGGGAGCTT CACCAGGTGT
    TTCTAGACAT GGCCGTGCTG GTAGAGCACC AGGGAGCTCA GCTTGATGAC
    ATCGAGAGTC ATGTGGGTCG AGCTAGCTCC TTTATCAGAG GCGGAACTGA
    CCAGCTACAA ACCGCTCGGG TTTACCAGAA GAACACGCGA AAATGGACAT
    GTATTGCCAT TATTATTCTC ATCATCATCA TAACTGTTGT GGTTCTTGCT
    GTTTTAAAAC CGTGGAACAA CAGCAGTGGC GGCGGCGGCG GTGGTGGTGG
    TGGGGGTACC ACTGGAGGAA GTCAACCAAA TTCAGGGACA CCACCAAATC
    CTCCTCAGGC AAGGCGTCTA TTGCGTTGAA GTTGAAGTTG AAGTTGAGTT
    TCGTTATTTG CATATATATT CTTTCTTTGA AAAACCTTAT TATCAAACCA
    GCTTTGTGTT ACTACTTTCT ACTGCTGGTT TGTTGTTAAT CTCCCGTTTA
    TTTGGTTTTT GTGAAAGAAT TTAAAATGTG GGTTAGATGA GAAAATTAGT
    ACAACATTCT CTTGTATCTA TGTTTGCTAT ATGGGTTATA TTTACT

    Gene models with high sequence identity

    1. AT3G11820.1 [+] show detail - syntaxin of plants 121
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 3.4e-50
    HMMPanther SYNTAXIN, ARABIDOPSIS THALIANA 1.3e-119
    HMMPanther SYNTAXIN 1.3e-119
    HMMSmart Syntaxin, N-terminal 2.9e-46
    HMMSmart Target SNARE coiled-coil domain 1e-19
    Coil coiled-coil 0
    PatternScan Syntaxin/epimorphin, conserved site 0
    HMMPfam Target SNARE coiled-coil domain 4.8e-22
    HMMPfam Syntaxin, N-terminal 0.000000000001
    ProfileScan Target SNARE coiled-coil domain 17.541
    superfamily t-SNARE 5.3e-50

    See the detailed result >

    AT3G11820.1

    Model type
    Protein coding
    Short Description
    syntaxin of plants 121
    Curator Summary
    Encodes a syntaxin localized at the plasma membrane (SYR1, Syntaxin Related Protein 1, also known as SYP121, PENETRATION1/PEN1). SYR1/PEN1 is a member of the SNARE superfamily proteins. SNARE proteins are involved in cell signaling, vesicle traffic, growth and development. SYR1/PEN1 functions in positioning anchoring of the KAT1 K+ channel protein at the plasma membrane. Transcription is upregulated by abscisic acid, suggesting a role in ABA signaling. Also functions in non-host resistance against barley powdery mildew, Blumeria graminis sp. hordei. SYR1/PEN1 is a nonessential component of the preinvasive resistance against Colletotrichum fungus. Required for mlo resistance.
    Computational Description
    syntaxin of plants 121 (SYP121); FUNCTIONS IN: protein anchor, SNAP receptor activity; INVOLVED IN: in 13 processes; LOCATED IN: SNARE complex, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), t-SNARE (InterPro:IPR010989), Syntaxin, N-terminal (InterPro:IPR006011); BEST Arabidopsis thaliana protein match is: syntaxin of plants 124 (TAIR:AT1G61290.1); Has 2385 Blast hits to 2376 proteins in 301 species: Archae - 0; Bacteria - 6; Metazoa - 1106; Fungi - 480; Plants - 466; Viruses - 0; Other Eukaryotes - 327 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR