F18845

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F18845

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F18845

Determination of introduced cDNA(s)

  • RAFL09-06-K07 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-06-K07 - Resource: pda05103

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-06-K07 - full reading 
    AAGAAAAAAT CTATCTCCGC CATGAACGCG AGAGCTCTTC TTTGCTCTTC 
    AAATATTCAC TCTCTCTACA CTTCAAATCG TCCACCTGAA AAAACCTCTT 
    CTTCTCGCAG CCTCCGTAAT CTCAAACCAT CTCCAAAGTC GTTACGGGTA 
    TGGATCTACC CGCGAAATAG GTCCAGTGTT TTCCGGGTAT TAGTTCGGAG 
    CTCCGACAAG AGTGAAAGCA GTAATTCGTA TTACGTAGAA GGAGATAAAG 
    TAAGTGGAAA CAATGACGTC GTTTCTGATT CGCCTAGCTC TATCGTCCTC 
    CCATGGTGGG AAGAGTTTCC GAAGCGGTGG GTGATTGTGT TACTCTGTTT 
    CTCAGCTTTT CTTCTCTGCA ATATGGACAG AGTGAATATG AGTATAGCTA 
    TACTTCCGAT GTCAGCTGAG TATGGTTGGA ATCCAGCAAC AGTTGGTCTG 
    ATTCAGTCTT CTTTCTTCTG GGGTTACCTT CTTACACAGA TAGCTGGTGG 
    AATTTGGGCA GACACTGTAG GAGGGAAAAG GGTTCTTGGA TTCGGTGTTA 
    TTTGGTGGTC AATCGCTACA ATTCTCACTC CTGTAGCTGC TAAACTCGGT 
    CTTCCTTACT TGCTCGTTGT TCGTGCTTTC ATGGGAGTTG GAGAGGGTGT 
    TGCAATGCCT GCTATGAATA ATATATTGTC GAAGTGGGTT CCTGTGCAAG 
    AGAGAAGCAG ATCACTCGCG CTTGTTTACA GCGGAATGTA CCTTGGATCT 
    GTCACCGGTT TAGCCTTTTC GCCTTTCTTG ATTCATCAAT TTGGATGGCC 
    TTCTGTGTTT TATTCTTTCG GGTCTCTTGG AACTGTATGG TTGACTCTGT 
    GGCTAACTAA GGCAGAGAGT TCACCATTAG AAGATCCAAC ATTGCTCCCT 
    GAAGAAAGAA AGCTAATTGC AGACAACTGT GCTAGCAAAG AGCCAGTGAA 
    GTCGATCCCG CGGAGGCTGA TATTGTCGAA ACCACCGGTT TGGGCTCTCA 
    TCAGTTGCCA CTTTTGTCAC AACTGGGGAA CATTCATTCT CTTAACATGG 
    ATGCCAACTT ATTACCATCA AGTGCTGAAG TTCAACCTTA TGGAGTCAGG 
    ACTTCTCTCT GTATTTCCAT GGATGACAAT GGCAATATCT GCAAATGCCG 
    GTGGATGGAT TGCCGATACA CTTGTCAGCC GAGGTTTCTC TGTCACGAAT 
    GTCCGCAAGA TAATGCAAAC AATAGGGTTT CTTGGACCAG CGTTCTTCCT 
    AACACAGCTG AAACACATAG ATTCTCCTAC AATGGCTGTT TTGTGCATGG 
    CTTGTAGTCA GGGGACTGAT GCGTTTTCAC AGTCTGGTCT ATACTCTAAC 
    CATCAAGACA TCGCTCCAAG ATACTCTGGA GTGTTACTTG GTTTGTCTAA 
    TACTGCTGGA GTACTTGCCG GAGTTCTTGG CACAGCTGCG ACTGGTCACA 
    TACTACAACA CGGTTCTTGG GATGACGTTT TCACGATTTC GGTCGGTCTT 
    TACCTCGTTG GGACCGTCAT TTGGAACCTA TTTTCAACCG GAGAGAAGAT 
    AATCGATTGA TCCATTCCGA GAATAGTAAA TAGTTCGGCT CCAAGACCTC 
    TCATCAGGTG CAACTTCACC TCACGCCAGT CTCTGATTAT ACAAGTATCA 
    TTGCAGTCTG AGAGCTAGCC GGAATATTCC TTTTTTGCCA GAAAATTCTT 
    CAGGATCTTT CTGCTCGTTG ATTTAGGCCA AACGCATATG AATAATACTT 
    TGTAGATGAA AGATATACAG ATGATTTTTT GTAAATAAAC AAAGCTCACA 
    CTTTCTCAAG ACT

    Gene models with high sequence identity

    1. AT2G29650.1 [+] show detail - phosphate transporter 4;1
      E-value: 0; Score: 99.94

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Major facilitator superfamily MFS-1 2.4e-62
    ProfileScan MFS 24.798
    superfamily Major facilitator superfamily, general substrate transporter 1.7e-86
    HMMPanther SODIUM-DEPENDENT PHOSPHATE TRANSPORTER-RELATE 7.5e-305
    HMMPanther SODIUM-DEPENDENT PHOSPHATE TRANSPORTERS 7.5e-305

    See the detailed result >

    AT2G29650.1

    Model type
    Protein coding
    Short Description
    phosphate transporter 4;1
    Curator Summary
    Encodes an inorganic phosphate transporter (PHT4;1) that is localized to the thylakoid membrane.
    Computational Description
    phosphate transporter 4;1 (PHT4;1); CONTAINS InterPro DOMAIN/s: Major facilitator superfamily (InterPro:IPR020846), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT4G00370.1); Has 36081 Blast hits to 35982 proteins in 2442 species: Archae - 467; Bacteria - 29522; Metazoa - 2463; Fungi - 1237; Plants - 437; Viruses - 0; Other Eukaryotes - 1955 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR