F19419

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F19419

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	cauline leaf (PO:0000013)	abnormal (PATO:0000460) (Cauline leaf::Others)
	rosette leaf (PO:0000014)	desaturated green (PATO:0001272) (Rosette leaf::Color::pale)
T2
	cauline leaf (PO:0000013)	present in fewer numbers in organism (PATO:0001997) (Cauline leaf::Number::few)
	rosette leaf (PO:0000014)	desaturated green (PATO:0001272) (Rosette leaf::Color::pale) abnormal (PATO:0000460) (Rosette leaf::Others)
	fruit (PO:0009001)	abnormal (PATO:0000460) (Silique::Others)
	stem (PO:0009047)	decreased thickness (PATO:0000592) (Stem::Shape::thin) desaturated green (PATO:0001272) (Stem::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F19419

Determination of introduced cDNA(s)

RAFL09-22-P10 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-22-P10 - Resource: pda05683

full reading [+] show sequence

AAAATAAAAG TTTCTATAAG AAGAAATCTC GTCTCTGTTT AATTCTCTCT 
TTAACGTTTT GATCCGTTTC CATAAGAACA TAACAGAGCA AGAAAAAAAA 
GAAAGCACAA GCTTTGTTGT TCTGAAGAGA AAACAAACAA AACAGAGAGT 
TTAAGACAGA GAGAAGCTCA TGGATGTTTT TGCTTTCAAT GCTTCTTTAT 
CCATGTGTAA AGATGTTGCC GGAATCGCAG GCAACATATT TGCATTTGGA 
CTCTTCGTTT CACCAATGCC AACGTTTAGG AGGATCATGA GGAACAAATC 
GACGGAGCAA TTCTCCGGTT TACCATACAT TTACGCTCTC TTAAACTGCT 
TGATCTGCCT TTGGTATGGC ACACCTTTCA TATCACACAG CAATGCCATG 
CTTATGACTG TGAATTCCGT TGGAGCTACG TTTCAGCTTT GCTACATTAT 
CCTCTTCATC ATGCATACAG ACAAGAAGAA CAAGATGAAG ATGCTTGGTT 
TGCTTTTTGT GGTGTTTGCT GTGGTTGGAG TGATTGTAGC TGGAAGTTTG 
CAGATACCTG ACCAGCTCAC ACGGTGGTAC TTTGTCGGGT TCTTGAGCTG 
CGGTTCTCTT GTTTCAATGT TTGCCTCGCC GTTGTTTGTT ATTAACCTAG 
TGATTCGGAC TAAGAGCGTT GAGTTTATGC CGTTTTATCT CTCGCTATCG 
ACTTTCTTGA TGAGTGCTTC CTTCCTTCTT TACGGGTTAT TCAACAGCGA 
TGCCTTTGTT TATACACCAA ATGGAATAGG AACGATTCTT GGCATTGTGC 
AGCTGGCTTT GTACTGTTAC TACCACAGGA ATTCTATAGA AGAAGAAACA 
AAAGAGCCTT TGATTGTTTC TTACGTGTGA GGTTCGCGCA AAGAAGCAAA 
TTTATAGTGG GGAAATTAAA AGAAACCAGA AAATGTGGTG ACATCAAGAT 
TCTTTGTTGT TGTTGTTATT GTTGTCTACT CTGTGTAGCT CATTGTGACT 
ATCTACCGGC TTTCATTCTC TCATGGCGTG AAGATGTTTA TTCTCTCTGC 
TTCTGTCATG ATCGAAGGAT GGAAGTCTTT TTCAGTTTTG ATGGCTCAAT 
TGCTGAAGAT TATGTGAAGA CACATGACAG ATTCACTGGT GTACGTGGGT 
TTTGTTTTTT TGTGGTGGAA ATCTCATGGT GGGTCGATAA CGTTTGTCCA 
TATATTGTTT GTTTTTTTTG AAGATTACTC TATTTTTTTG TTCATAAGAT 
TTTTTTTCTT TGATATGGAA ATCTCTGGTG GGTTGATTTG AAGACC

Gene models with high sequence identity

AT3G14770.1 [+] show detail - Nodulin MtN3 family protein
E-value: 0; Score: 99.92

InterPro Scan Digest

Program	Description	E-value
HMMPanther	RAG1-activating protein 1 homologue	5.7e-83
HMMPanther	RAG1-activating protein-1-related	5.7e-83
HMMPfam	MtN3/saliva-related transmembrane protein, conserved region	1.7e-19
HMMPfam	MtN3/saliva-related transmembrane protein, conserved region	4.9e-23

See the detailed result >

AT3G14770.1

Model type: Protein coding
Short Description: Nodulin MtN3 family protein
Computational Description: Nodulin MtN3 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: MtN3/saliva-related transmembrane protein, conserved region (InterPro:IPR018169), RAG1-activating protein 1 homologue (InterPro:IPR018179), RAG1-activating protein-1-related (InterPro:IPR004316); BEST Arabidopsis thaliana protein match is: Nodulin MtN3 family protein (TAIR:AT1G21460.1); Has 914 Blast hits to 907 proteins in 114 species: Archae - 0; Bacteria - 0; Metazoa - 192; Fungi - 0; Plants - 613; Viruses - 0; Other Eukaryotes - 109 (source: NCBI BLink).
Link: InterPro Scan - TAIR