F19447

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F19447

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F19447

Determination of introduced cDNA(s)

  • RAFL05-14-F18 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-14-F18 - Resource: pda17078

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-14-F18 - full reading 
    CCCCGGCATC ATTTTGTATC ATCCCTTGAA AACGTTAAAT GATCTTCTCC 
    TCCGATCATT AGTCTCTTTA ATCTTTCTCA GCCTCTTCTT GTTCGTGATC 
    TCTCTTCCTC CGGAAAAAGA TGTCGGCCGG TAACGGAAAT GCTACTAACG 
    GTGACGGAGG GTTTAGTTTC CCTAAAGGAC CGGTGATGCC GAAGATAACG 
    ACCGGAGCAG CAAAGAGAGG TAGCGGAGTC TGCCACGACG ATAGTGGTCC 
    GACGGTGAAT GCCACAACCA TCGATGAGCT TCATTCGTTA CAGAAGAAAC 
    GTTCTGCTCC TACCACACCG ATCAACCAAA ACGCCGCCGC TGCTTTTGCC 
    GCCGTCTCCG AGGAGGAGCG TCAGAAGATT CAGCTTCAAT CTATCAGTGC 
    ATCGTTAGCA TCGTTAACGA GAGAGTCAGG ACCAAAGGTG GTGAGAGGAG 
    ATCCGGCGGA GAAGAAGACC GATGGTTCAA CTACTCCGGC GTACGCTCAC 
    GGCCAACATC ATTCTATCTT TTCTCCGGCT ACTGGTGCTG TCAGTGATAG 
    CTCCTTGAAG TTTACTCACG TCCTCTACAA TCTTTCGCCT GCAGAGCTTT 
    ATGAGCAAGC TATTAAGTAT GAGAAAGGTT CGTTTATCAC TTCTAATGGA 
    GCTTTGGCGA CGCTTTCTGG TGCTAAGACT GGTCGTGCTC CCAGAGATAA 
    GCGTGTTGTT AGAGATGCTA CTACTGAGGA TGAGCTTTGG TGGGGAAAGG 
    GTTCGCCGAA TATCGAAATG GATGAACATA CTTTCATGGT GAACAGAGAA 
    AGAGCTGTTG ATTACTTGAA TTCCTTGGAA AAGGTCTTTG TCAATGACCA 
    ATACTTAAAC TGGGATCCAG AGAACAGAAT CAAAGTCAGG ATTGTCTCAG 
    CTAGAGCTTA CCATTCATTG TTTATGCACA ACATGTGTAT CCGACCAACT 
    CAGGAGGAGC TTGAGAGCTT TGGTACTCCG GATTTTACTA TATACAATGC 
    TGGGCAGTTT CCATGTAATC GTTACACTCA TTACATGACT TCGTCCACTA 
    GCGTAGACCT TAATCTGGCT AGGAGGGAAA TGGTTATACT TGGTACTCAG 
    TATGCTGGGG AAATGAAGAA GGGTCTTTTC AGTGTGATGC ATTACCTTAT 
    GCCTAAGCGT CGTATTCTCT CCCTTCATTC TGGATGCAAT ATGGGAAAAG 
    ATGGAGATGT TGCTCTCTTC TTTGGACTTT CAGGTACCGG GAAGACAACG 
    CTGTCTACTG ATCACAACAG GTATCTTATT GGAGATGATG AGCATTGTTG 
    GACTGAGACT GGTGTTTCGA ACATTGAGGG TGGGTGCTAT GCTAAGTGTG 
    TTGATCTTTC GAGGGAGAAG GAGCCTGATA TCTGGAACGC TATCAAGTTT 
    GGAACAGTTT TGGAAAATGT TGTGTTTGAT GAGCACACCA GAGAAGTGGA 
    TTACTCTGAT AAATCTGTTA CAGAGAACAC ACGTGCTGCC TACCCAATTG 
    AGTTCATTCC AAATGCGAAA ATACCTTGTG TTGGTCCACA CCCGACAAAT 
    GTGATACTTC TGGCTTGTGA TGCCTTTGGT GTTCTCCCAC CTGTGAGCAA 
    GCTGAATCTG GCACAAACCA TGTACCACTT CATCAGTGGT TACACTGCTC 
    TGGTTGCTGG CACAGAGGAT GGTATCAAGG AGCCAACAGC AACATTCTCA 
    GCTTGCTTTG GTGCAGCTTT CATAATGTTG CATCCCACAA AGTATGCAGC 
    TATGTTAGCT GAGAAGATGA AGTCACAAGG TGCTACTGGT TGGCTCGTCA 
    ACACTGGTTG GTCTGGTGGC AGTTATGGTG TTGGAAACAG AATCAAGCTG 
    GCATACACTA GAAAGATCAT CGATGCAATC CATTCGGGCA GTCTCTTGAA 
    GGCAAACTAC AAGAAAACCG AAATCTTTGG ATTTGAAATC CCAACTGAGA 
    TCGAAGGGAT ACCTTCAGAG ATCTTGGACC CCGTCAACTC CTGGTCTGAT 
    AAGAAGGCAC ACAAAGATAC TCTGGTGAAA CTGGGAGGTC TGTTCAAGAA 
    GAACTTCGAG GTTTTTGCTA ACCATAAGAT TGGTGTGGAT GGTAAGCTTA 
    CGGAGGAGAT TCTCGCTGCT GGTCCTATCT TTTAGAAAAA CCAAACTCTG 
    AATGATGTTG TCGAAAAGAA AGAAAGATCT ACTATTATTA AGAAGAATAA 
    AATGAGACTT TGTGTTTTTC TTTGCTGTGA TAATCTCTCT GAATAATAGA 
    GAGAATTTAA TGTTCCAAAT GTGGTGCGAT ATGGATAATG ATGATGACTA 
    TATGTAATTT ATTACTAAAA AAAAAA

    Gene models with high sequence identity

    1. AT4G37870.1 [+] show detail - phosphoenolpyruvate carboxykinase 1
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HAMAP Phosphoenolpyruvate carboxykinase, ATP-utilising 47.708
    Gene3D Phosphoenolpyruvate carboxykinase, N-terminal 8.3e-68
    Gene3D Phosphoenolpyruvate carboxykinase, C-terminal 1.1e-103
    HMMPfam Phosphoenolpyruvate carboxykinase, ATP-utilising 7.7e-213
    superfamily PEP carboxykinase-like 8.1e-90
    superfamily Phosphoenolpyruvate carboxykinase, N-terminal 1.3e-74
    HMMTigr Phosphoenolpyruvate carboxykinase, ATP-utilising 3.2e-275
    PatternScan Phosphoenolpyruvate carboxykinase (ATP), conserved site 0

    See the detailed result >

    AT4G37870.1

    Model type
    Protein coding
    Short Description
    phosphoenolpyruvate carboxykinase 1
    Curator Summary
    Encodes a putative phosphoenolpyruvate carboxykinase (ATP-dependent).
    Computational Description
    phosphoenolpyruvate carboxykinase 1 (PCK1); FUNCTIONS IN: phosphoenolpyruvate carboxykinase activity, purine nucleotide binding, phosphoenolpyruvate carboxykinase (ATP) activity, ATP binding; INVOLVED IN: defense response to fungus, incompatible interaction, response to cadmium ion, cellular response to phosphate starvation, gluconeogenesis; LOCATED IN: cytosol, nucleolus, nucleus, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoenolpyruvate carboxykinase, N-terminal (InterPro:IPR008210), Phosphoenolpyruvate carboxykinase (ATP), conserved site (InterPro:IPR015994), Phosphoenolpyruvate carboxykinase, ATP-utilising (InterPro:IPR001272), Phosphoenolpyruvate carboxykinase, C-terminal (InterPro:IPR013035); BEST Arabidopsis thaliana protein match is: phosphoenolpyruvate carboxykinase 2 (TAIR:AT5G65690.1); Has 4504 Blast hits to 4501 proteins in 1411 species: Archae - 21; Bacteria - 2559; Metazoa - 2; Fungi - 139; Plants - 194; Viruses - 0; Other Eukaryotes - 1589 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR