F19813

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F19813

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F19813

Determination of introduced cDNA(s)

  • RAFL05-17-D12 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-17-D12 - Resource: pda07377

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-17-D12 - full reading 
    TCTTCATAAA AAGTTGTTGT GAACAGCCAT TACAATTGGA CGATTCCATG 
    AGACTCCCCA AGGAAACCAT TGATATTCTC AGGGGCCAAG TATTTGGATT 
    TGACACCTTC TTCGTAACAA GCCAAGAACC ATATGAGGGT GGGGTATTGT 
    TCAAAGGAAA TCTAAGAGGC AAGCCTGCTA CAAGTTACGA GAAGATAAAG 
    ACGAGGATGG AGAATAATTT TGGTGACCAG TACAAGCTTT TCCTTCTCAC 
    GAATCCTGAG GATGATAAAC CTGTGGCCGT TGTTGTTCCA AGAAGGTCCT 
    TAGAACCCGA GACAACAGCT GTTCCTGAAT GGTTTGCTGC TGGTTCTTTT 
    GGATTGGTGG CATTGTTTAC ATTGTTTCTC CGTAATGTGC CTGCCTTGCA 
    ATCCGACTTA CTATCGGCCT TTGACAACCT TGAACTGTTA AAAGATGGCT 
    TACCAGGAGC TCTTGTCACC GCTCTTGTCC TTGGAGTACA TGAACTGGGA 
    CACATTTTAG TTGCAAATAG CTTAGGAATA AAGCTTGGTG TTCCATTCTT 
    TGTTCCAAGT TGGCAGGCTC TTTCGGTGCT ATAACGAGAA TCAAAAATAT 
    CGTAGCCAAG CGAGAAGATC TTTTGAAGGT TGCAGCTGCA GGACCTTTGG 
    CTGGCTTTTC TCTAGGCTTG ATTCTGTTTC TTATAGGGTT ATTCGTGCCT 
    CCCAGTGACG GCATTGGCGT TGTAGTTGAT GCATCAGTGT TTCACGAGTC 
    CTTCCTTGCT GGTGGTATTG CAAAGCTCCT ACTAGGTGAT GCACTCAAAG 
    AAGGAACTTC AATATCTCTT AACCCACTTG TGATCTGGGC ATGGGCTGGA 
    CTTCTCATCA ATGGCATTAA CAGTATCCCT GCGGGGGAGC TCGATGGGGG 
    CAAAATAGCT TTCTCCATTT GGGGAAGAAA GACCGCAACA CGGCTCACGG 
    GTGCATCCAT AGCGCTTTTG GGCTTATCGG CGTTGTTCAG CGACGTGGCA 
    TTCTACTGGG TGGTTCTGAT ATTCTTCCTG CAGCGTGGAC CGATTGCGCC 
    GCTGGCTGAA GAAATCACGG TGCCTGATGA TAAGTATGTG TCTCTTGGAA 
    TCCTGGTTTT GTTTCTCTCC TTGCTTGTGT GTTTGCCTTA CCCATTTGCT 
    TTCACGGGCA ATGAAGCCAT GATGATTGGC TTGTGAAGTG ACTCATATCA 
    TTACACCGCA CAATAAGAAA TCAGAGATAT AGTTGTAACT TTTTGTTTTG 
    GTCTCTATGC TCTACTTTGA CATCTAAAGT TATGTTTTTG TTCTTGCTCT 
    ATATTTTTAC TCTCATGGAG CAGTTTAGGA AACAAACCAA ATTTCTCACA 
    GAAATGTGAA CTAATATTTT GCTT

    Gene models with high sequence identity

    1. AT5G05740.1 [+] show detail - ethylene-dependent gravitropism-deficient and yellow-green-like 2
      E-value: 0; Score: 99.71

     

    InterPro Scan Digest

    See the detailed result >

    AT5G05740.1

    Model type
    Protein coding
    Short Description
    ethylene-dependent gravitropism-deficient and yellow-green-like 2
    Curator Summary
    S2P-like putative metalloprotease, also contain transmembrane helices near their C-termini and many of them, five of seven, contain a conserved zinc-binding motif HEXXH. Homolog of EGY1. Each of the EGY1 and EGY-like proteins share two additional highly conserved motifs, the previously reported NPDG motif (aa 442
    Computational Description
    ethylene-dependent gravitropism-deficient and yellow-green-like 2 (EGY2); FUNCTIONS IN: metalloendopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M50 (InterPro:IPR008915); BEST Arabidopsis thaliana protein match is: Peptidase M50 family protein (TAIR:AT5G35220.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR