F19841

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F19841

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F19841

Determination of introduced cDNA(s)

RAFL06-07-J21 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-07-J21 - Resource: pda02842

full reading [+] show sequence

AAAAAAAAGC TGACTCTACG CTCTCTCAAA AGTCGAATAT CCCAAATTCG 
ATCCGTTTTC CGGCGATAAT CTCCGATCTA GATCCGATGG CGAAAGAACC 
AGTTCGTGTG CTCGTTACTG GAGCTGCAGG ACAAATCGGA TATGCTCTTG 
TACCTATGAT TGCAAGGGGT ATCATGCTTG GTGCTGACCA ACCTGTTATC 
CTCCACATGT TGGATATTCC TCCAGCTGCT GAAGCTTTGA ACGGTGTTAA 
GATGGAGTTG ATCGATGCTG CTTTCCCTCT TCTTAAAGGT GTTGTTGCTA 
CAACTGATGC CGTTGAGGGA TGTACTGGAG TCAATGTTGC TGTTATGGTT 
GGTGGTTTCC CGAGGAAAGA AGGTATGGAG AGGAAGGATG TGATGTCCAA 
GAATGTTTCC ATCTACAAGT CTCAGGCTGC TGCCTTGGAG AAGCATGCCG 
CTCCTAACTG CAAGGTTCTT GTTGTGGCCA ACCCGGCAAA CACCAACGCA 
TTGATCCTCA AGGAATTTGC ACCATCAATC CCTGAAAAGA ACATCTCTTG 
TTTGACAAGG CTTGACCACA ACAGGGCTTT GGGACAGATC TCTGAGAGGT 
TGAGCGTGCC AGTGTCTGAT GTTAAGAACG TGATCATCTG GGGAAACCAC 
TCATCCTCAC AGTACCCAGA TGTCAACCAT GCTAAAGTGC AGACCTCGTC 
TGGAGAGAAG CCTGTCCGTG AGCTCGTCAA GGACGATGCA TGGTTGGACG 
GAGAATTTAT CTCTACAGTT CAACAACGTG GAGCTGCAAT CATCAAGGCG 
AGGAAGTTGT CTAGTGCGCT CTCTGCTGCT AGCTCTGCTT GTGACCACAT 
CCGTGACTGG GTCCTTGGAA CTCCAGAGGG TACGTTCGTT TCCATGGGAG 
TATACTCCGA TGGCTCTTAC AGCGTTCCAT CAGGACTTAT CTACTCCTTC 
CCTGTAACTT GTCGCAATGG AGACTGGAGT ATTGTCCAAG GCCTTCCGAT 
TGATGAAGTA TCAAGGAAGA AGATGGATTT GACTGCAGAG GAGCTCAAGG 
AAGAGAAGGA CTTGGCGTAC TCATGCCTCT CTTAAACCCT TCTGGAGCAA 
AATTTTCATC TATAAGGTGT GAGATCAGTT AAAGCCTTTC AGGGCTTTGT 
CCGAATAAGA AGTGTGTTTG AAAGATCTCC AAACACTGTT TTATAACCTC 
TTTGGTCTCT TTGATGAGTA TTGTCCCTGG TCTGTTTCTA AACCAGGATA 
TCGTTTTTTT CAATGTGTCT GATTTGGTTT ACCCATGAAA AGAAGAAAAT 
TGGCAGTTGC ATGG

Gene models with high sequence identity

AT1G04410.1 [+] show detail - Lactate/malate dehydrogenase family protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
superfamily	Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal	2.1e-60
superfamily	NAD(P)-binding domain	3.2e-43
Gene3D	NAD(P)-binding domain	2.7e-51
Gene3D	Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal	4e-70
HMMPanther	Malate dehydrogenase, NAD/NADP	6.1e-130
HMMPIR	L-lactate/malate dehydrogenase	6.4e-58
HMMPfam	Lactate/malate dehydrogenase, C-terminal	8.7e-42
HMMPfam	Lactate/malate dehydrogenase, N-terminal	3.2e-33
PatternScan	Malate dehydrogenase, active site	0
HMMTigr	Malate dehydrogenase, NAD/NADP	2.4e-241
HMMTigr	Malate dehydrogenase, NAD-dependent, cytosolic	1.5e-276

See the detailed result >

AT1G04410.1

Model type: Protein coding
Short Description: Lactate/malate dehydrogenase family protein
Computational Description: Lactate/malate dehydrogenase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: response to cadmium ion, response to zinc ion, response to salt stress; LOCATED IN: in 7 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Malate dehydrogenase, NAD-dependent, cytosolic (InterPro:IPR011274), Lactate/malate dehydrogenase, N-terminal (InterPro:IPR001236), Malate dehydrogenase, NAD/NADP (InterPro:IPR010945), Lactate/malate dehydrogenase, C-terminal (InterPro:IPR022383), NAD(P)-binding domain (InterPro:IPR016040), L-lactate/malate dehydrogenase (InterPro:IPR001557), Malate dehydrogenase, active site (InterPro:IPR001252), Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal (InterPro:IPR015955); BEST Arabidopsis thaliana protein match is: Lactate/malate dehydrogenase family protein (TAIR:AT5G43330.1); Has 11998 Blast hits to 11997 proteins in 3022 species: Archae - 169; Bacteria - 7171; Metazoa - 1456; Fungi - 287; Plants - 683; Viruses - 0; Other Eukaryotes - 2232 (source: NCBI BLink).
Link: InterPro Scan - TAIR