F19909

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F19909

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F19909

Determination of introduced cDNA(s)

  • RAFL08-10-A13 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL08-10-A13 - Resource: pda04571

    full reading [+] show sequence

    Nucleotide sequence: RAFL08-10-A13 - full reading 
    ACCCAAAGCC ACTCACTCTC TCTTCTCTCT CTCTGAAGCG ATGTCATCGA 
    CGTTTCGAGC TCCGGCGGGA GCCGCTACTG TGTTTACGGC GGATCAGAAG 
    ATCAGACTTG GGAGGCTCGA CGCTCTGAGA TCCTCTCATT CTGTTTTCTT 
    AGGAAGATAT GGACGCGGCG GCGTCCCGGT TCCTCCTTCC GCTTCTTCGT 
    CGAGTTCTTC GCCTATTCAA GCCGTCTCCA CTCCTGCGAA GCCTGAGACT 
    GCGACCAAGC GGAGCAAAGT CGAAATTATC AAGGAGAAGA GTAATTTCAT 
    AAGGTATCCT TTGAACGAGG AGCTTTTAAC AGAGGCTCCA AATGTCAACG 
    AGTCAGCCGT GCAGCTTATC AAGTTCCACG GTAGCTACCA ACAGTACAAC 
    AGAGAAGAAC GTGGTGGAAG ATCTTACTCC TTCATGCTTC GAACTAAGAA 
    TCCATCTGGG AAGGTCCCTA ACCAGCTCTA TTTGACTATG GATGACTTAG 
    CTGATGAGTT TGGAATTGGT ACTCTTCGTT TGACCACAAG GCAGACGTTT 
    CAGCTTCATG GTGTTCTGAA GCAGAATCTT AAGACTGTGA TGAGCTCGAT 
    TATTAAAAAT ATGGGTAGCA CGCTTGGTGC ATGTGGTGAT CTGAACAAAA 
    ATGTTCTTGC TCCTGCTGCA CCTTATGTGA AGAAAGACTA TCTCTTTGCA 
    CAAGAAACTG CTGACAACAT TGCGGCTCTT CTTTCTCCTC AATCAGGGTT 
    CTATTATGAT ATGTGGGTTG ATGGAGAGCA GTTCATGACT GCTGAACCTC 
    CAGAGGTAGT GAAGGCTCGA AATGATAACT CCCATGGAAC TAACTTTGTC 
    GACTCTCCTG AGCCCATCTA TGGCACCCAG TTCTTGCCTA GAAAGTTCAA 
    GGTCGCTGTA ACTGTTCCTA CAGATAATTC CGTCGACCTC CTCACCAATG 
    ACATTGGCGT TGTTGTTGTT TCAGATGAAA ATGGGGAACC ACAGGGTTTC 
    AATATTTATG TTGGTGGGGG TATGGGAAGA ACACACAGAA TGGAGTCTAC 
    TTTTGCCCGC CTGGCAGAAC CAATAGGTTA TGTTCCAAAG GAAGATATTT 
    TGTATGCTGT GAAGGCCATT GTAGTCACAC AGCGAGAACA CGGGAGACGA 
    GATGATCGTA AATATAGCAG AATGAAATAT TTGATCAGCT CCTGGGGAAT 
    TGAGAAGTTC AGAGATGTTG TTGAGCAATA TTATGGTAAA AAGTTTGAGC 
    CTTCCCGTGA ACTTCCAGAG TGGGAGTTCA AGAGTTACTA GGGATGGCAT 
    GAACAGGGAG ATGGTGCATG GTTTTGTGGG CTTCACGTAG ACAGTGGTCG 
    TGTTGGAGGT ATAATGAAGA AGACGCTGAG AGAAGTAATA GAGAAATACA 
    AAATTGATGT CCGCATCACA CCAAACCAAA ACATTGTCTT GTGTGATATA 
    AAGACTGAAT GGAAGCGTCC CATCACCACA GTACTTGCTC AGGCCGGCTT 
    ACTGCAACCT GAGTTTGTCG ACCCATTAAA CCAAACTGCA ATGGCTTGCC 
    CAGCTTTTCC TTTGTGCCCT CTGGCAATAA CTGAGGCAGA GCGCGGGATC 
    CCCAGCATTC TAAAGAGAGT TAGGGCAATG TTTGAAAAGG TTGGTCTGGA 
    CTACGACGAG TCTGTTGTGA TAAGAGTAAC CGGTTGTCCA AACGGCTGTG 
    CAAGACCGTA CATGGCTGAG CTCGGTCTAG TCGGGGATGG TCCCAACAGC 
    TATCAGGTTT GGCTAGGAGG AACACCGAAC CTGACCCAGA TAGCGAGAAG 
    TTTCATGGAT AAGGTTAAGG TTCACGACTT AGAGAAAGTC TGCGAGCCAT 
    TGTTCTATCA CTGGAAACTA GAGAGGCAAA CTAAAGAATC ATTTGGAGAA 
    TACACAACCC GCATGGGATT CGAGAAACTG AAGGAGCTGA TAGATACATA 
    CAAAGGAGTT TCTCAATGAG CACAACAGAG ATCATCTTTC GTTTTATAAT 
    TCATGTAATG TAATGTCTCT GTCTGAACTG TTACTCTTCG GTAACTCTGA 
    TGGAGAACTT GTTCTCGTTT TGGTTTGATT TTGTACCCTC TTTTTTTTTT 
    TTTGTTTTTT TGGATTGCTT TGTCTTTGAT TGGATAATGA AGCATTACTG 
    TATCAAGGCT AATTAGCCCA TCAATAAGCC TTTTTAAAT

    Gene models with high sequence identity

    1. AT5G04590.1 [+] show detail - sulfite reductase
      E-value: 0; Score: 99.86

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Nitrite/sulphite reductase iron-sulphur/siroheam-binding site 0
    superfamily Sulfite reductase hemoprotein (SiRHP), domain 8.2e-54
    superfamily Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like 2.3e-13
    superfamily Sulfite reductase hemoprotein (SiRHP), domain 2e-32
    superfamily Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like 2.8e-18
    FPrintScan Nitrite/sulphite reductase iron-sulphur/siroheam-binding site 5.4e-10
    FPrintScan Nitrite/sulphite reductase iron-sulphur/siroheam-binding site 5.4e-10
    Gene3D no description 2.9e-19
    Gene3D no description 5.8e-60
    Gene3D no description 1.6e-15
    Gene3D no description 1.3e-35
    HMMPfam Nitrite/sulphite reductase 4Fe-4S domain 2e-48
    HMMPfam Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like 1.6e-15
    HMMPfam Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like 4.9e-13
    HMMPfam Nitrite/sulphite reductase 4Fe-4S domain 3.6e-11

    See the detailed result >

    AT5G04590.1

    Model type
    Protein coding
    Short Description
    sulfite reductase
    Curator Summary
    A.thaliana gene encoding sulfite reductase.
    Computational Description
    sulfite reductase (SIR); FUNCTIONS IN: sulfite reductase activity, sulfite reductase (ferredoxin) activity, copper ion binding; INVOLVED IN: sulfate reduction, response to salt stress, response to cold; LOCATED IN: in 7 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sulphite reductase, ferredoxin dependent (InterPro:IPR011787), Nitrite/sulphite reductase iron-sulphur/siroheam-binding site (InterPro:IPR006066), Nitrite/sulphite reductase 4Fe-4S domain (InterPro:IPR006067), Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like (InterPro:IPR005117); BEST Arabidopsis thaliana protein match is: nitrite reductase 1 (TAIR:AT2G15620.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR