F19945

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F19945

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F19945

Determination of introduced cDNA(s)

RAFL17-19-H19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL17-19-H19 - Resource: pda10570

full reading [+] show sequence

CATCGCTGTC TGGAACAGCA AAAACCATCT CTCAAAATGG CTTTGACTGT 
TCACAAGAAA GCTCCCCAAA AGGAGCGTTG CTTTACTCTC CTATAAAAAG 
AAGCTCTTCT ACTTCTTCTC GTTACCACAA AACTCTTTCA CCGATCTTCT 
CGTTCCATTC TTCTTCCTAA TTACACCATG CCCAACATCA CCATGGGTTT 
GAAACCCGAC CCGGTTGCTC CAACGAACCC GACTCATCAT GAGAGTAATG 
CTGCCAAAGA GATTCGTTAC AGAGGCGTTA GGAAACGTCC ATGGGGAAGA 
TACGCCGCTG AGATCCGAGA TCCGGTTAAG AAAACTCGAG TCTGGCTCGG 
TACGTTCGAC ACCGCTCAGC AGGCGGCGCG TGCTTACGAC GCAGCCGCGC 
GTGACTTTCG TGGTGTTAAG GCTAAGACCA ATTTCGGTGT TATCGTTGGT 
AGTAGTCCTA CTCAGAGTAG CACCGTCGTC GACTCTCCCA CGGCGGCACG 
GTTTATAACA CCTCCGCACC TCGAGCTCAG CTTAGGCGGC GGCGGCGCGT 
GTCGTCGTAA GATCCCGCTT GTGCATCCGG TTTACTACTA TAACATGGCG 
ACGTATCCAA AGATGACGAC GTGTGGTGTC CAGAGCGAGT CTGAAACGTC 
GTCGGTCGTT GATTTCGAAG GTGGAGCTGG GAAGATATCT CCGCCGTTAG 
ATCTGGATCT TAACTTAGCT CCTCCGGCGG AATAGGCCGT GAGTTTTTTT 
TTTCTTATGT CGTTTCTTTA GACAAAAAAA AAATAACGTT TCCTTTTTTT 
TTCTGCCTAA GAAAAAAATA TTATCCGTTT TTTAGAAGAA AGTGTAGAAA 
AGCTCCAATA TAATTTTTAG CTGCCGAG

Gene models with high sequence identity

AT1G53170.1 [+] show detail - ethylene response factor 8
E-value: 0; Score: 99.88

InterPro Scan Digest

Program	Description	E-value
FPrintScan	Pathogenesis-related transcriptional factor/ERF, DNA-binding	4.3e-11
FPrintScan	Pathogenesis-related transcriptional factor/ERF, DNA-binding	4.3e-11
ProfileScan	Pathogenesis-related transcriptional factor/ERF, DNA-binding	23.288
HMMPfam	Pathogenesis-related transcriptional factor/ERF, DNA-binding	1e-15
superfamily	DNA-binding, integrase-type	2.8e-22
Gene3D	Pathogenesis-related transcriptional factor/ERF, DNA-binding	8.8e-22
HMMSmart	Pathogenesis-related transcriptional factor/ERF, DNA-binding	1.4e-34

See the detailed result >

AT1G53170.1

Model type: Protein coding
Short Description: ethylene response factor 8
Curator Summary: encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-8). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole.
Computational Description: ethylene response factor 8 (ERF8); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ethylene responsive element binding factor 4 (TAIR:AT3G15210.1); Has 5970 Blast hits to 5718 proteins in 254 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 5959; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Link: InterPro Scan - TAIR