F20438

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F20438

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F20438

Determination of introduced cDNA(s)

  • RAFL09-20-L04 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-20-L04 - Resource: pda05585

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-20-L04 - full reading
    GATCTTGTTC CCCGTCGTCG TCTCTAACTT ACACATTTCC ATTCTCCGAA 
    TCTCTATCTC TCCTTTTGCT TCATCGGTGT GATCTCTGAG ACGAAAGAAG
    AAGAAGATGG TGGTTATTGA GCAGAAGAAG AGGTTTGCTT TGTTTTTAGC
    GACGTGTGAT TCAGAGTTCG TGAAGAAGAC TTACGGTGGT TACTTCAATG
    TCTTCGTTTC AACTTTCGGC GAAGAAGGTG AGCAATGGGA TCTATTCCGA
    GTCATCGACG GACAATTTCC CGACGAGAAT GATTTAGACA AGTACGACGG
    TTTCGTTATC AGTGGTAGTC CACATGATGC TTTCGGAGAC GCCGATTGGA
    TTGTTAAGCT TTGCGAAGTT TGTCAGAAAC TTGATCACAT GAAGAAGAAA
    GTTCTCGGCA TCTGCTTCGG CCACCAGATA ATTACTAGAG TTAAAGGTGG
    GAAGATAGGA AGAGCACTCA AAGGTGCAGA TATGGGACTT AGAAGCATAA
    CCATAGCGAA AGACAATGAA AAACTACGAG GTTACTTTGG AGACGTTGAG
    GTCCCAGCAT ATTTAGCTAT TATAAAATGT CATCAGGATG AAGTGTTGGA
    ACTTCCTGAG TCTGCTACAC TACTTGCTTC TTCTGAGGTA TGTAACGTCG
    AGATGTTCTC TATTGGAGAT CATTTTTTCT GTATTCAAGG GCATCCAGAG
    TATAACAAAG AGATTCTGTT TGAGATTGTG GACCGAGTCC TTAATATGAA
    GCTGATGGAG CAAGAGTTTG CGGATAAGGC AAAGAGTACG ATGGAGACTG
    CGCAACCAGA CAGGATTCTA TGGCAGAAGC TCTGCAAAAA CTTCCTGAAA
    GGTTGATGAT CCGAGACTAT GTTATCTCTG TATGAACTTA TCAAAAACTA
    TGTCATCTCT CAATAAACCT GCAGTATCTT TC

    Gene models with high sequence identity

    1. AT4G30550.1 [+] show detail - Class I glutamine amidotransferase-like superfamily protein
      E-value: 0; Score: 99.89

     

    InterPro Scan Digest

    Program Description E-value
    BlastProDom Homoserine O-succinyltransferase 0.000003
    ProfileScan Glutamine amidotransferase type 1 13.541
    superfamily Class I glutamine amidotransferase-like 8e-39
    HMMPfam Glutamine amidotransferase class-I, C-terminal 0.00000000000029
    Gene3D no description 1.8e-40
    HMMPanther GMP SYNTHASE 0.000003
    HMMPanther GMP SYNTHASE-RELATED 0.000003

    See the detailed result >

    AT4G30550.1

    Model type
    Protein coding
    Short Description
    Class I glutamine amidotransferase-like superfamily protein
    Computational Description
    Class I glutamine amidotransferase-like superfamily protein; FUNCTIONS IN: catalytic activity, acyltransferase activity; INVOLVED IN: L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine; LOCATED IN: endomembrane system, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Homoserine O-succinyltransferase (InterPro:IPR005697), Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), Glutamine amidotransferase type 1 (InterPro:IPR017926); BEST Arabidopsis thaliana protein match is: Class I glutamine amidotransferase-like superfamily protein (TAIR:AT2G23970.1); Has 7193 Blast hits to 7193 proteins in 1745 species: Archae - 322; Bacteria - 3933; Metazoa - 5; Fungi - 197; Plants - 101; Viruses - 0; Other Eukaryotes - 2635 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR