F20615

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F20615

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F20615

Determination of introduced cDNA(s)

RAFL09-97-J05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-97-J05 - Resource: pda10032

full reading [+] show sequence

GTTCCAAGTC CGCTTATCGA ATTCTCCGAT TCCAAAAGCA GCAGAAGAAA 
AAATGTCAGC CATGGAAGCA CTGATTCTCC AGCTGCATGA AATCGGCGCC 
GTGAAATTCG GCAATTTCAA GCTCAAATCT GGAATCTTTT CTCCGGTTTA 
CATCGACCTT CGTCTCATCG TCTCTTATCC ATCCCTCTTA ACACAGATCT 
CTCAAACTCT CATCTCTTCT CTTCCACCTT CTGCAACCTT CGACGTCGTC 
TGTGGTGTTC CTTACACTGC TCTCCCTATC GCCACTGTTG TCTCTGTTTC 
CAATGGTATC CCTATGCTTA TGCGGCGTAA GGAGATTAAA GACTATGGAA 
CATCTAAAGC TATTGAAGGA ATCTTCGAAA AGGATCAAAC TTGTTTGATA 
ATTGAAGATC TTGTAACTAG TGGTGCTTCT GTTCTCGAGA CTGCTGCTCC 
TCTTCGTGCT GTGGGGTTAA AGGTTAGTGA CGCGGTGGTT TTGATTGATA 
GGCAACAAGG GGGTAGGGAG AATCTAGCGG AGAATGGGAT TAAGTTACAT 
TCGATGATTA TGTTGACGGA TATGGTTAGG GTTTTGAAGG AAAAGGGGAA 
AATTGAAGTG GAGGTTGAAG TGAATTTGCT TAAGTTTTTG GAAGAGAATC 
GTAGGGTTAG TGTTCCAAGT GTGGAGAAAC CTAAGCCTAA GCCTAGGGTT 
TTGGGGTTCA AGGAAAGGTC TGAGCTTTCT AAGAATCCGA CAGGGAAGAA 
GCTGTTTGAT ATTATGTTGA AGAAGGAAAC CAATCTTTGT TTAGCTGCTG 
ATGTTGGAAC TGCTGCTGAA TTGCTTGACA TCGCAGATAA GGTGGGACCA 
GAGATTTGTC TCTTGAAGAC TCATGTTGAT ATACTGCCTG ATTTCACCCC 
TGACTTTGGC TCTAAGCTCC GTGCGATTGC AGACAAGCAC AAATTTCTCA 
TATTTGAGGA TCGCAAGTTT GCAGACATTG GTAACACTGT CACTATGCAG 
TATGAAGGAG GCATCTTTAA AATATTGGAG TGGGCTGATA TTATCAACGC 
TCATGTAATA TCGGGGCCAG GAATCGTGGA TGGCCTGAAA TTGAAGGGTA 
TGCCTCGTGG TAGAGGTTTG CTTTTGCTTG CTGAAATGAG CTCTGCAGGT 
AACCTGGCTA CAGGAGACTA CACTGCAGCA GCTGTGAAAA TCGCAGACGC 
TCATTCTGAT TTTGTGATGG GATTCATCTC GGTGAATCCA GCATCTTGGA 
AATGCGGGTA TGTGTATCCG TCTATGATTC ATGCAACACC TGGTGTTCAA 
ATGGTGAAAG GTGGTGATGC ACTTGGTCAG CAGTATAACA CTCCACACTC 
TGTGATTACT GAGAGGGGAA GTGATATTAT AATCGTGGGA CGGGGAATCA 
TAAAGGCGGA AAACCCAGCA GAGACGGCTC ATGAGTATAG AGTTCAAGGA 
TGGAATGCAT ACTTGGAGAA ATGCTCTCAG TAGATTCGAT CCTGAGAGAT 
GGCTGAGATT TTTTGTTTTT GTGTTCTAGT GCTATAAGAT TGTGCTAGTT 
TTTGTGTGAT TTATGTGAGG ATGGATTTTA AGACTCATGT CTCGTTGATT 
GTTTACTTGA TTGAGTGATT CTCAGTTCTC AATAATAATA AAGTGAAGCG 
TGGCGAGTAG TTGATCTCT

Gene models with high sequence identity

AT3G54470.1 [+] show detail - uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS)
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
superfamily	Ribulose-phosphate binding barrel	1.9e-68
superfamily	PRTase-like	2.4e-39
PatternScan	Orotidine 5'-phosphate decarboxylase, active site	0
HMMTigr	Orotate phosphoribosyl transferase	6.2e-43
HMMTigr	Orotidine 5'-phosphate decarboxylase, subfamily 1, core	1.1e-74
Gene3D	no description	9.5e-51
Gene3D	Aldolase-type TIM barrel	2.7e-98
HMMPfam	Orotidine 5'-phosphate decarboxylase, core	4.3e-75
HMMPfam	Phosphoribosyltransferase	1.9e-08

See the detailed result >

AT3G54470.1

Model type: Protein coding
Short Description: uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS)
Curator Summary: encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis
Computational Description: uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS); FUNCTIONS IN: orotate phosphoribosyltransferase activity, orotidine-5'-phosphate decarboxylase activity; INVOLVED IN: response to cadmium ion, cellular response to phosphate starvation, pyrimidine ribonucleotide biosynthetic process, nucleoside metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: guard cell, cultured cell; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Orotidine 5'-phosphate decarboxylase, subfamily 1, core (InterPro:IPR014732), Orotidine 5'-phosphate decarboxylase, active site (InterPro:IPR018089), Ribulose-phosphate binding barrel (InterPro:IPR011060), Phosphoribosyltransferase (InterPro:IPR000836), Orotate phosphoribosyl transferase (InterPro:IPR004467), Orotidine 5'-phosphate decarboxylase, core (InterPro:IPR001754); Has 9174 Blast hits to 9124 proteins in 2964 species: Archae - 386; Bacteria - 5538; Metazoa - 208; Fungi - 955; Plants - 89; Viruses - 3; Other Eukaryotes - 1995 (source: NCBI BLink).
Link: InterPro Scan - TAIR