F21134

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F21134

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F21134

Determination of introduced cDNA(s)

  • RAFL05-14-F20 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-14-F20 - Resource: pda07304

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-14-F20 - full reading
    TGGAAACACA CAGTTCCGTA GCAGAGTTTT AGTTTTAGCA GAGTTGGTGA 
    AATCAATGGG CCACCAAAAC GCCGCCGTTT CAGAGAATCA AAACCATGAT
    GACGGCGCTG CGTCGTCGCC GGGATTCAAG CTCGTCGGAT TTTCCAAGTT
    CGTAAGAAAG AATCCAAAGT CTGATAAATT CAAGGTTAAG CGCTTCCATC
    ACATCGAGTT CTGGTGCGGC GACGCAACCA ACGTCGCTCG TCGCTTCTCC
    TGGGGTCTGG GGATGAGATT CTCCGCCAAA TCCGATCTTT CCACCGGAAA
    CATGGTTCAC GCCTCTTACC TACTCACCTC CGGTGACCTC CGATTCCTTT
    TCACTGCTCC TTACTCTCCG TCTCTCTCCG CCGGAGAGAT TAAACCGACA
    ACCACAGCTT CTATCCCAAG TTTCGATCAC GGCTCTTGTC GTTCCTTCTT
    CTCTTCACAT GGTCTCGGTG TTAGAGCCGT TGCGATTGAA GTAGAAGACG
    CAGAGTCAGC TTTCTCCATC AGTGTAGCTA ATGGCGCTAT TCCTTCGTCG
    CCTCCTATCG TCCTCAATGA AGCAGTTACG ATCGCTGAGG TTAAACTATA
    CGGCGATGTT GTTCTCCGAT ATGTTAGTTA CAAAGCAGAA GATACCGAAA
    AATCCGAATT CTTGCCAGGG TTCGAGCGTG TAGAGGATGC GTCGTCGTTC
    CCATTGGATT ATGGTATCCG GCGGCTTGAC CACGCCGTGG GAAACGTTCC
    TGAGCTTGGT CCGGCTTTAA CTTATGTAGC GGGGTTCACT GGTTTTCACC
    AATTCGCAGA GTTCACAGCA GACGACGTTG GAACCGCCGA GAGCGGTTTA
    AATTCAGCGG TCCTGGCTAG CAATGATGAA ATGGTTCTTC TACCGATTAA
    CGAGCCAGTG CACGGAACAA AGAGGAAGAG TCAGATTCAG ACGTATTTGG
    AACATAACGA AGGCGCAGGG CTACAACATC TGGCTCTGAT GAGTGAAGAC
    ATATTCAGGA CCCTGAGAGA GATGAGGAAG AGGAGCAGTA TTGGAGGATT
    CGACTTCATG CCTTCTCCTC CGCCTACTTA CTACCAGAAT CTCAAGAAAC
    GGGTCGGCGA CGTGCTCAGC GATGATCAGA TCAAGGAGTG TGAGGAATTA
    GGGATTCTTG TAGACAGAGA TGATCAAGGG ACGTTGCTTC AAATCTTCAC
    AAAACCACTA GGTGACAGGC CGACGATATT TATAGAGATA ATCCAGAGAG
    TAGGATGCAT GATGAAAGAT GAGGAAGGGA AGGCTTACCA GAGTGGAGGA
    TGTGGTGGTT TTGGCAAAGG CAATTTCTCT GAGCTCTTCA AGTCCATTGA
    AGAATACGAA AAGACTCTTG AAGCCAAACA GTTAGTGGGA TGAACAAGAA
    GAAGAACCAA CTAAAGGATT GTGTAATTAA TGTAAAACTG TTTTATCTTA
    TCAAAACAAT GTTATACAAC ATCTCATTTA AAAACGAGAT CAAT

    Gene models with high sequence identity

    1. AT1G06570.1 [+] show detail - phytoene desaturation 1
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 6.1e-79
    Gene3D no description 1.4e-73
    HMMPanther 4-hydroxyphenylpyruvate dioxygenase 3.5e-154
    HMMPfam Glyoxalase/bleomycin resistance protein/dioxygenase 9.3e-06
    superfamily Glyoxalase/Bleomycin resistance protein/Dihyd 3e-123
    HMMTigr 4-hydroxyphenylpyruvate dioxygenase 6.8e-163

    See the detailed result >

    AT1G06570.1

    Model type
    Protein coding
    Short Description
    phytoene desaturation 1
    Curator Summary
    Mutation of the PDS1 locus disrupts the activity of p-hydroxyphenylpyruvate dioxygenase (HPPDase), the first committed step in the synthesis of both plastoquinone and tocopherols in plants.
    Computational Description
    phytoene desaturation 1 (PDS1); CONTAINS InterPro DOMAIN/s: 4-hydroxyphenylpyruvate dioxygenase (InterPro:IPR005956), Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360); Has 2414 Blast hits to 2412 proteins in 817 species: Archae - 3; Bacteria - 1671; Metazoa - 206; Fungi - 158; Plants - 88; Viruses - 0; Other Eukaryotes - 288 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR