F21333

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F21333

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F21333

Determination of introduced cDNA(s)

  • RAFL05-21-L06 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-21-L06 - Resource: pdz87543

    5 prime EST [+] show sequence

    Nucleotide sequence: RAFL05-21-L06 - 5 prime EST 
    GACGACGACT ACCAAACACT CCGATCAACG GTCCTCCGAT TCTCTCTCGC 
    TTTCGTGGCG ACCTCAAAAA TGTCGCAGCA AATCAGCGGT AATAATAATA 
    TCCCGCTGAG TGAAGTTTAC TGGTCTCTCG TTAACAAAGC CGATAAGAAA 
    TTCTCCAAGA TCAGAGACTT GCCCTTCTAT GAACGCTCCA GGTATGAGAA 
    CTATTTCTTC AAGGTATTCA AAGTATACAC ACAACTATGG AAGTTTCAGC 
    AAGAGAATAG GCAGAAGCTT GTTGAAGCTG GACTTAAGAG ATGGGAGATT 
    GGAGAGATCG CTTCTCGCAT TGCCCAGCTT TACTATGGAC ATTATATGCG 
    AACAAGTGAT GCTGGTTACT TATCCGAGTC CTATGTATTC TACGAAGCAA 
    TACTCACTAG GGAGTACTTC AAAGATGGAT TGTTTCAGGA TCTCAATATT 
    GCAAACAAGC AGCTTCGGTT TCTTGCAAGG TTTCTTATGG TGTGTTTGGT 
    TCTTGGCCGC CGTGAGATGG TGCATCAACT CGTTGATCAG TTTAAACGGT 
    TGATTGATGA ATGCAAGAGG ACATTCCAGG AAACCGATTT TAAGGAATGG 
    AAGGNGGTGG CGCANGAAAT AGNTAGATTT CTGAAATC

    Gene models with high sequence identity

    1. AT3G03570.1 [+] show detail - Protein of unknown function (DUF3550/UPF0682)
      E-value: 0; Score: 99.53

    AT3G03570.1

    Model type
    Protein coding
    Short Description
    Protein of unknown function (DUF3550/UPF0682)
    Computational Description
    FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP013022 (InterPro:IPR016607); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3550/UPF0682) (TAIR:AT4G40050.1); Has 215 Blast hits to 210 proteins in 65 species: Archae - 0; Bacteria - 0; Metazoa - 130; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR