F21411

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F21411

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • increased size (PATO:0000586)
    (Rosette leaf::Shape::large)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F21411

Determination of introduced cDNA(s)

  • RAFL09-96-K10 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-96-K10 - Resource: pda09115

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-96-K10 - full reading 
    ATTCCTTTAA TGGTATTGTT GTTATTACCT TGTATTTCAT CTCCTTGTTT 
    TCGTTTTTTC CACACACTCT TGCTTCTCCT ACGGCCCACC GTTGCCGCCA 
    TGATCAGAGG GATGCTCTTT TGGAGTTCAA ACACGAGTTT CCGGGAGCAG 
    ATATGAACTT CCGGAGACTT GAAAATATGA GGTCATGGAA CAAGAGCAGT 
    GATTGCTGTT CTTGGGAGTC TGTCACGTGT GATGCTAAAT ATGGCCAGGT 
    GATTTCACTT TATCTTCTTG GCGTTAATCT TAACAACACT TTAAAACCAA 
    ATAGTGGTCT TTTCAAACTC CAATATCTCC AAAACCTAAC CCTTCGTTAT 
    TGCAATCTCT ATGGAGAGAT TCCTTTTTCA TTAGGAACCC TTTCTCATCT 
    CACCTTTCTC GACCTTTCGG AAAATAAATT AGTTGGTCAA GTTCCATCTT 
    CAATTGGAAA CTTGACCAAA CTAATGTACC TTCGCCTTTC CATAAACCAC 
    TTAAGTGGCA AATCTTCTGT TTCATTTGCC AATTTAACGA AATTGATCCA 
    ACTCGACATC AGAGAAAATG ACTTTGAACC CGAGCTTATA CCGGACATGA 
    GCCGATTCCA CAACTTGGAG GGATTTGGGG GTGGGAACTT TTTCGGGCCT 
    TTTCCTACAT CCTTGTTCAC GATTCCTTCG TTACGATGGG TTAATTTGAG 
    GGACAGTAAC AACAACTTCA CGGGACATAT AGATTTTGGG AATTCGTCTT 
    TATCTTCTAG GCTTTCTTAT CTTAGTCTTG CTGATAACAA TTTCGATGGC 
    CCAATCCCTG AATCCATATC TAAATTTCTC AATCTCGTAT TATTAGATCT 
    TCGTAACAAC TCATTTTCCG GGCCTTTCCC AACATCCTTG TTCAAGATTC 
    CTTCGTTACA ATGGGTTACT TTGGCGCGAA ACAATTTCAA GGGACCTATA 
    GATTTTGGGA ATACATGGCC ATCATCGTCT AGTCTTAGTA GTCTATACCT 
    TGCTGATAAC AATTTCGATG GCCAAATCCC AGAATCCATA TCTCAATTTC 
    TCAAACTCGA AAGGTTAGAT ATTTCCAACA ATAAGTTGCA AGGCAATGTC 
    CCAGGTTGCT TATTGAGATT GTCATCGCTA GAACTTTCTC ACAACTCTTT 
    GAGTGGTTTT GGAAAATCAT CACAAGTTCT AGATCAAGCA CAAATGCGAG 
    TTTGCGTCTT GATTCTAATT CATTCCAAGG ACCATTTCCA CATTGGATCT 
    GCCAGTTTAG ATTGCTGGAG ATTTTAGATT TGTCCAACAA TAGCTTCAGT 
    GGCTCAATTC CTCTATGTTT AAGGAATATC ACTTATTCTT TGGAAGTGCT 
    TAATCTACGA AACAACAATT TCAGTGGGAT TCTTCCAGAT GTGTTTCTCA 
    ATGCTACTCG TTTATACACA CTTGATGTTA CCCGCAACCG GTTGGAAGGT 
    AAACTCCCAA AAACCTTGAT CAATTGCACA TCCATGCGAC TTTTGAATGT 
    GGAAGGAAAC AAATTCAAGG AGACGTTTCC ATCTTGGTTG GGTTCTATGC 
    CATATTTAGA TATCCTCATC CTCCGAGCCA ACCAATTCTA TGGGCCGTTA 
    TATCACCTCC ACGAATCTAC TTGGTTTCAA CATTTAAAGG TTATTGATGT 
    CTCACATAAT GACTTCACTG GATCCTTCCC AGCTTTCTAT TTTTCCAACT 
    GGCTTCAAAT GACTACATTA CACCTAGAAA TTGATGTTGT ATACTTCGAA 
    TATCCTACCA TCCAAGATGA TTATGATGAC CCTTATTTTG GTACTTACAC 
    TAGTTCAATG GAAATAGTGA ACAAAGGTGT GGATAGAGAG TTTGATAAGA 
    TCAGGCAAGA CTTCACATCC ATTGATTTTT CAAGCAACAA GTTTTATGGA 
    AAGATCCCTG AATCCATTGG CTTGTTGAAG GGATTACGTT TTCTCAACTT 
    GTCGGGTAAT GCTTTCACAA GCGATATACC TCAATCATTG GCAAATTTGA 
    CGAATCTCGA GGCATTAGAT TTGTCTCATA ATCAGCTGTC AGGTCAGATT 
    CCCCGAGATC TTGGTGAGCT CTCCTTTCTG TCAACCATGA ACTTCGCCCA 
    CAACAATCTC GAAGGTCCAA TACCACGCGG AACACAATTT CAACGCCAAA 
    ACTGTTCTTC ATTCATGGAC AACCCCAAGC TTTATGGTCT CGATGATATC 
    TGCAGAAAAA CTCATGTCCC AAATCCTAGA CCACAAGAAT TAGAGAAAGT 
    ATCAGAGCCG GAAGAAGAGC AAGTGATTAA CTGGACATCA GCAGCAATAG 
    CGTATGGACC TGGTGTGTTT TGCGGATTAG TGATTGGACA TATCTTCATT 
    TCGCATAAGC AGGAGTGGTT AATGGAAAAG TGTCGTAGAA ACAAGCCCAG 
    AGTTGTCATC AGAAGCGCTC GTTGAACACG TGTCCTCTCT CTAAGCATTG 
    TCAAGCATAT GTATGTGTTT GTAATAACGT TCTCCAAAAA CTCTTTCGTG 
    CGTTGTAATG TTCTAATATA TGGTTTTGTA ATAAACGTCT TTGGTGGCGG 
    TACGTATTTG ATACATATTG GTTTGAAAAT GCATTCAAAT ACTCTTTTAG 
    TTCCT

    Gene models with high sequence identity

    1. AT2G24160.1 [+] show detail - pseudogene, leucine rich repeat protein family, contains leucine rich-repeat domains Pfam:PF00560...
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther LRR RECEPTOR-LIKE KINASE 9e-51
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 9e-51
    HMMPanther LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KIN 3.5e-69
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 3.5e-69
    HMMSmart Leucine-rich repeat, typical subtype 22
    HMMSmart Leucine-rich repeat, typical subtype 80
    HMMSmart Leucine-rich repeat, typical subtype 0.81
    Gene3D no description 1.2e-31
    Gene3D no description 1.3e-27
    Gene3D no description 6.9e-55
    Gene3D no description 3.6e-07
    superfamily L domain-like 1.3e-62
    superfamily L domain-like 1.2e-53
    FPrintScan Toll-like receptor, leucine rich repeat-containing 1.3e-06
    FPrintScan Toll-like receptor, leucine rich repeat-containing 1.3e-06
    FPrintScan Toll-like receptor, leucine rich repeat-containing 5.9e-05
    FPrintScan Toll-like receptor, leucine rich repeat-containing 5.9e-05
    HMMPfam Leucine-rich repeat 0.14
    HMMPfam Leucine-rich repeat 0.036
    HMMPfam Leucine-rich repeat 0.58
    HMMPfam Leucine-rich repeat 0.019
    HMMPfam Leucine-rich repeat 0.0088
    HMMPfam Leucine-rich repeat 0.12
    HMMPfam Leucine-rich repeat 0.88
    HMMPfam Leucine-rich repeat 0.12
    HMMPfam Leucine-rich repeat-containing N-terminal domain, type 2 1.6e-12

    See the detailed result >

    AT2G24160.1

    Model type
    Pseudogene
    Computational Description
    pseudogene, leucine rich repeat protein family, contains leucine rich-repeat domains Pfam:PF00560, INTERPRO:IPR001611; contains some similarity to Cf-4 (Lycopersicon hirsutum) gi|2808683|emb|CAA05268; blastp match of 37% identity and 8.4e-98 P-value to GP|2808683|emb|CAA05268.1||AJ002235 Cf-4 {Lycopersicon hirsutum}
    Link
    InterPro Scan - TAIR