F21908

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F21908

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F21908

Determination of introduced cDNA(s)

  • RAFL09-64-A03 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-64-A03 - Resource: pda09880

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-64-A03 - full reading 
    GGCTGTGGCG GGACCCAAGT TTTGACAATG GCTGAAGATG AAATAGTAGT 
    CGAAGAAGAG CAATCACAGC CACAGGAGAT TACTCCAGTT CCACCATCTT 
    CTTCGTCTTC GCCTTCGTTA GTGGTGGAAG ACGACGATGA GATGAAGCTC 
    AAGCACTTGG AATTCATTCA AGTCGCGGCG GTTTACTTCG CCGCCTGTTT 
    CTCGACCCTC TACGAGTTGG CTAAAGACAA CGCTGGTCCA CTCAAACTCG 
    GCGTCGAGAA CATTGAAGAT TGCGTTCGAA CCGTGCTTGC TCCATTATAC 
    GAAAAATTCC ACGACGTTCC TTTCAAGCTT CTCCTTTTCG TCGATCGTAA 
    GGTGGACGAT GTGTTCTTCG ATGTTGAGAC ATATGTTCCG TCATTGGTGA 
    AGCAAGCTTC TAGCCAAGCG CTCACGGTGG CCACGGAGGT GCAGCGCACC 
    GGCGTTGTGG ACACTACCAA GAGCATTGCA AGAAGCGTCC GGGACAAGTA 
    CGAGCCAGCG GCAGAGTATT ACGCAGCGAC GCTGTGGCGT TTACTGAATC 
    AACTGCCGTT GTTCCCTGAA GTTGCGCATT TAGTGATCCC CACGGCGTTT 
    TACTGGTCAG AGAAGTACAA CGATGCGGTT CGTTACGTTG GCGACAGAGA 
    CTACTTTGGG GCAGAGTATC TACCCATGAT TCCTATTGAG AAGATCTCTG 
    ATATTTTGGA ACAAGATCAG TGTCGAGCTG ATTGACTATT TACTCTTCTG 
    AAGCCAAAGA TTCCTTCTTC TATAGAGTAT ATATACTGTA TGTACTCTGT 
    TTTTCTTTCC TTTCTGCAAT TTGCTATCCC AAGAGATGTA ATCTTTCTTC 
    AATATTTCAT TT

    Gene models with high sequence identity

    1. AT2G47780.1 [+] show detail - Rubber elongation factor protein (REF)
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    See the detailed result >

    AT2G47780.1

    Model type
    Protein coding
    Short Description
    Rubber elongation factor protein (REF)
    Computational Description
    Rubber elongation factor protein (REF); CONTAINS InterPro DOMAIN/s: Rubber elongation factor (InterPro:IPR008802); BEST Arabidopsis thaliana protein match is: Rubber elongation factor protein (REF) (TAIR:AT3G05500.1); Has 126 Blast hits to 126 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 126; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR