F21926

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F21926

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F21926

Determination of introduced cDNA(s)

  • RAFL09-82-D16 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-82-D16 - Resource: pda09939

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-82-D16 - full reading
    GGTGCGTAAT TCCATCTTTG AAATCTCAGA GCAACAAAAC CCTAGCTACA 
    TTTCTCGATA TCGGAGAAAA GATCCGGCGA AGATGTCAGG TGGCTTAGAT
    ATGTCACTTG ATGATATCAT CAAATCTAAT CGAAAACCTA CTGGATCTCG
    CGGCCGAGGA GGCATTGGAG GTGGCAATAA CACCGGTGGT CGCGGTGGTT
    CCGGTTCTAA TTCCGGTCCG TCTCGTCGGT TTGCTAACCG CGTAGGAGCC
    AGAACGGCGC CGTATTCAAG GCCGATTCAA CAACAACAAG CTCATGATGC
    GATGTGGCAA AACGACGTCT TCGCGACTGA TGCGTCTGTG GCGGCGGCTT
    TTGGGCATCA TCAGACTGCT GTTGTTGGTG GTGGCTCGTC TATCGAGACT
    GGAACTAAGC TTTACATTTC AAACTTAGAC TATGGTGTCT CCAACGAAGA
    TATCAAGGAG CTTTTCTCTG AGGTTGGTGA TCTTAAGCGA TATGGGATTC
    ACTATGATAG GAGTGGAAGA TCAAAGGGGA CTGCTGAAGT TGTTTTCTCG
    AGGCGTGGGG ATGCATTGGC AGCTGTCAAG CGTTACAACA ATGTTCAGTT
    GGATGGAAAA CTGATGAAGA TAGAGATTGT TGGGACTAAT CTTTCTGCTC
    CAGCTCTTCC CATTCTTGCT ACAGCTCAGA TTCCTTTTCC TACTAATGGG
    ATACTTGGCA ACTTTAATGA GAACTTTAAT GGCAATTTCA ATGGCAACTT
    CAATGGAAAC TTCAGAGGCA GAGGAAGAGG CGGTTTTATG GGGCGTCCTC
    GTGGTGGTGG TTTTGGCGGT GGTAATTTCA GAGGTGGCAG GGGAGCTAGA
    GGACGTGGTG GTCGTGGCAG TGGTGGAAGA GGACGTGATG AAAACGTATC
    TGCAGAGGAT CTTGATGCTG AATTGGACAA GTACCACAAA GAGGCAATGG
    AAACAAGTTA GAAAGGGGAG ATTAAACCTA TTGCATGTCT ACATGTATTC
    CTTCCTTTAG TGCCGATATG CTTTTGTATT AGTATGATCT TTAGATTGAA
    TGTCAATGGG TCTGACATTT TCGAGCTTTA GCTTTTGTTT TTTCTTCTCT
    TGGTGAGCTT CTTAGCTTTT TGCAGTTGAG TTCAGAGAAA CAAGCATTGT
    GTGTACCGTG GAACTCAAAA CTCTTCTAAA ATATCAATTC AAAACACAAT
    TCTAT

    Gene models with high sequence identity

    1. AT5G02530.1 [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Nucleotide-binding, alpha-beta plait 4.7e-19
    HMMPanther RNA AND EXPORT FACTOR BINDING PROTEIN 6.9e-71
    HMMPanther RNA AND EXPORT FACTOR BINDING PROTEIN 6.9e-71
    HMMSmart RNA recognition motif, RNP-1 7.9e-18
    ProfileScan RNA recognition motif, RNP-1 15.75
    superfamily RNA-binding domain, RBD 3.1e-21
    HMMPfam RNA recognition motif, RNP-1 0.000000000000072

    See the detailed result >

    AT5G02530.1

    Model type
    Protein coding
    Short Description
    RNA-binding (RRM/RBD/RNP motifs) family protein
    Computational Description
    RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G59950.1); Has 12422 Blast hits to 9446 proteins in 764 species: Archae - 2; Bacteria - 1351; Metazoa - 5150; Fungi - 2013; Plants - 2049; Viruses - 53; Other Eukaryotes - 1804 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR