F22044

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F22044

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
stem (PO:0009047)
  • present in fewer numbers in organism (PATO:0001997)
    (Stem::Number::few)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F22044

Determination of introduced cDNA(s)

  • RAFL09-37-D16 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-37-D16 - Resource: pda17706

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-37-D16 - full reading 
    CCAGGCCCGA ATTTGACTCT CCGATCATCG TCTCCGAATC TAGATCGACG 
    AGATCAAAAC CCTAGAAATC TAAATCGGAA TGAGAAATTG ATTTTGATAC 
    GAATTAGGGA TCTGTGTGTT GAGGACGATG AGTGACTCGG TGTCGATCTC 
    GGTTCCGTAT AGGAATTTGA GGAAGGAAAT TGAACTTGAG ACGGTCACCA 
    AGCATCGTCA AAACGAATCT GGTTCTTCGT CGTTCTCTGA ATCTGCTTCT 
    CCTTCGAATC ATTCTGATTC GGCTGATGGT GAATCTGTGT CGAAGAATTG 
    TAGTTTAGTG ACGTTGGTTC TTAGTTGTAC AGTTGCCGCT GGAGTTCAAT 
    TTGGTTGGGC ATTGCAACTT TCTCTTCTTA CTCCTTATAT TCAGACCCTT 
    GGAATATCGC ATGCTTTTTC TTCGTTTATT TGGCTGTGCG GCCCAATTAC 
    AGGCCTTGTG GTCCAGCCTT TTGTTGGCAT TTGGAGTGAT AAATGTACTT 
    CAAAGTATGG AAGAAGACGA CCATTTATTC TAGTTGGATC ATTCATGATC 
    TCAATAGCAG TGATAATAAT CGGATTTTCT GCAGACATTG GGTATCTGTT 
    AGGAGATTCA AAGGAACATT GCAGTACTTT CAAAGGCACA CGAACCAGGG 
    CAGCTGTTGT CTTTATCATT GGGTTTTGGT TGTTGGATCT AGCAAACAAT 
    ACAGTACAGG GACCTGCTCG TGCTCTTCTA GCTGATCTAT CAGGTCCTGA 
    TCAGCGGAAT ACTGCAAATG CTGTGTTCTG CTTGTGGATG GCTATTGGGA 
    ACATCCTTGG GTTTTCTGCC GGTGCTAGCG GAAAATGGCA AGAATGGTTC 
    CCTTTTTTAA CTAGTAGAGC ATGTTGTGCT GCATGTGGAA ATCTCAAAGC 
    AGCGTTTCTT CTTGCAGTGG TCTTTCTCAC TATATGTACT CTTGTCACAA 
    TCTATTTTGC TAAAGAGATT CCTTTTACAA GCAACAAGCC CACCCGCATA 
    CAAGATTCTG CACCTTTGTT GGATGATCTC CAGTCCAAAG GCCTTGAGCA 
    TTCAAAATTA AATAATGGTA CTGCCAATGG AATCAAGTAT GAGAGAGTGG 
    AACGTGATAC GGATGAACAG TTTGGCAATT CAGAGAATGA GCATCAAGAT 
    GAGACCTACG TTGATGGCCC TGGATCTGTT TTAGTGAATT TGCTAACTAG 
    TTTAAGGCAT TTGCCACCGG CTATGCACTC AGTTCTTATC GTCATGGCTC 
    TTACATGGTT ATCCTGGTTC CCCTTCTTTC TGTTCGATAC AGATTGGATG 
    GGAAGAGAAG TTTACCATGG GGATCCAACA GGAGATAGTT TGCATATGGA 
    ACTCTATGAT CAAGGTGTAC GTGAAGGTGC ACTTGGTTTG CTACTAAACT 
    CTGTTGTTCT TGGGATCAGC TCATTTCTCA TTGAACCAAT GTGTCAGCGG 
    ATGGGTGCTC GGGTTGTATG GGCTTTGAGC AATTTTACTG TATTTGCCTG 
    CATGGCGGGA ACAGCTGTAA TCAGCTTGAT GTCTCTCAGT GATGACAAAA 
    ATGGAATTGA ATACATAATG CGTGGAAACG AAACAACAAG AACCGCAGCC 
    GTAATCGTTT TTGCACTCCT TGGTTTTCCC CTAGCTATCA CATACAGTGT 
    CCCTTTCTCT GTCACAGCAG AAGTCACTGC TGATTCCGGT GGCGGTCAAG 
    GTTTGGCTAT AGGAGTGTTG AATCTCGCAA TCGTTATTCC CCAGATGATA 
    GTATCACTTG GAGCGGGTCC ATGGGATCAA TTGTTTGGAG GAGGAAACTT 
    ACCGGCGTTT GTTTTGGCGT CTGTTGCTGC TTTCGCTGCT GGAGTTATTG 
    CATTGCAAAG GCTTCCCACG CTATCGAGTT CTTTCAAGTC CACCGGTTTC 
    CACATCGGCT AAAATCTTTA TACCACAGAC ATAAAATTCA CAGTTAGATC 
    TACCCGATTC TTTTTGACCA CGTTCTCCTC TCGGCGTATA TGTAAGTAGG 
    TTTTGTACAT CTAGTTTTCT TATATGTTAT ACACAGCAAT GTGACTCTAA 
    AAA

    Gene models with high sequence identity

    1. AT2G02860.1 [+] show detail - sucrose transporter 2
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Major facilitator superfamily MFS-1 1.2e-22
    HMMTigr Sucrose/H+ symporter, plant 1.2e-156
    HMMPanther SUCROSE TRANSPORT 3.4e-222
    HMMPanther SUGAR TRANSPORTER 3.4e-222
    superfamily Major facilitator superfamily, general substrate transporter 7.3e-33

    See the detailed result >

    AT2G02860.1

    Model type
    Protein coding
    Short Description
    sucrose transporter 2
    Curator Summary
    encodes a sucrose transporter in sieve elements and a number of sink tissues and cell types. Gene expression is induced by wounding.
    Computational Description
    sucrose transporter 2 (SUT2); CONTAINS InterPro DOMAIN/s: Sucrose/H+ symporter, plant (InterPro:IPR005989), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: sucrose-proton symporter 2 (TAIR:AT1G22710.1); Has 2242 Blast hits to 2047 proteins in 559 species: Archae - 40; Bacteria - 808; Metazoa - 438; Fungi - 240; Plants - 408; Viruses - 0; Other Eukaryotes - 308 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR