F22142

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F22142

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F22142

Determination of introduced cDNA(s)

RAFL09-63-M16 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-63-M16 - Resource: pda12360

full reading [+] show sequence

CTCCGCCGGC GAACAGTTTT ATTATCTCTC TCTTTCTGCG TGTTCCAATT 
TCTTCCACAA AACCCTAATT TTCTCTTAAA CCCTGAAATT CGTGTAACCT 
TTCAACAATC TCTTCAATTT TGTTTTCGAT TCTGAATCCA TTGTTTACGA 
ATCTCTCATC TAAAGCTACA TTCTTCGTTA AATCGTTTTT AATCGACTCG 
CTCACTCGTG AGTTGACTCG TCAGCTGTTT CCATAATTGC TTATTGAATT 
TTTATACGAT GATGTTTCAA TATGGAAGAA ACTAGAGGAA TTTCTGATCC 
AGAGAATGGG AGTTCGAGTT ACGGCGGTAA ACCGCCGAAT CCACTCTCCT 
TCTCTTCTTC CTCCGCCGCT GCTGCCGTTT ACAGGCAAAC CTTCGACGGC 
GAGCGATCGT TGGCGCCGTG TAATAAGAGG TCACTGGTTC GACACTCATC 
TCTCGTGAAG ACAATGGTGT CAGATATATC TGTTGAGAAT GAGTTTACTA 
TAGAGAAGAA CAAGTCTGAG TTTGTTCCTG CTACGCGTTC TGGAGCTTGG 
TCTGATATTG GCTCCAGGTC AAGCATGGAA GATGCTTATC TATGCGTTGA 
TAATTTCATG GATAGCTTTG GCCTTCTGAA TTCTGAGGCT GGTCCAAGTG 
CCTTCTATGG GGTATTTGAT GGACATGGTG GGAAGCATGC CGCTGAGTTT 
GCATGTCACC ATATACCGAG GTACATTGTT GAAGATCAAG AGTTTCCTAG 
TGAAATCAAT AAGGTGTTAT CTTCAGCATT TCTTCAAACA GACACTGCCT 
TCTTAGAGGC GTGTTCATTG GATGGGAGCC TTGCTTCAGG AACTACTGCT 
TTGGCAGCTA TTCTTTTTGG AAGGTCGTTG GTGGTAGCAA ACGCTGGAGA 
TTGCAGAGCA GTCTTATCCC GTCAGGGAAA AGCCATTGAA ATGTCAAGAG 
ACCACAAACC CATGAGCAGT AAGGAAAGGA GACGCATTGA AGCATCGGGT 
GGACATGTAT TCGATGGCTA TCTAAATGGA CAACTTAATG TGGCTCGAGC 
GCTAGGTGAC TTTCATATGG AAGGCATGAA GAAGAAGAAA GATGGTTCTG 
ATTGTGGACC TCTAATTGCA GAGCCTGAGC TCATGACAAC AAAACTAACA 
GAAGAGGATG AGTTCCTTAT AATTGGGTGT GACGGGGTTT GGGATGTGTT 
CATGAGCCAG AATGCTGTAG ATTTTGCCAG AAGGAGACTA CAGGAGCACA 
ATGACCCGGT CATGTGTAGT AAGGAGCTGG TTGAGGAAGC TTTGAAGAGG 
AAGAGTGCTG ATAATGTGAC GGCAGTGGTT GTGTGTCTTC AGCCACAGCC 
ACCACCGAAC TTGGTAGCGC CGAGGTTGAG AGTTCACAGA AGCTTCTCGG 
CGGAGGGTTT AAAAGATTTA CAGAGCTACT TGGATGGCTT GGGAAACTAA 
TTGGGGGACA TGAGGATGGT GACGAATGAT TGATTTCTCT GTTTTTGTTT 
TGTCTTTTCT TACAATTTTA TAGTTTGGGG TTTGGAGGTT TTGTTCTGTT 
AAATTCTCGC AATTTGAGTA AGTTATAACA TGAGGCGGCA TACAATAATT 
TATTGTTTGG TAGGATATAT TTTTTTGTCA CTTTTGCATA ATAATAATTC 
TGCTTCAGTC TCATTTGTTT TGTAACTAGA AAGTTATTCC AATTCCTGCG 
TTTACCGAAT ATGTTGTGTT CTTGCAGAAT GACGTATGTT AGATATGCAG 
TAAACTCGAG GGTCGGCTTT GACCACATCG CCACTTATCG GTTTGCGGAT 
GCTGGAAAAG TCAGTCTAGT GATGAGGCTG AGTGAGCCAT CGTCAGTTAC 
TATTTTATCG TGAAACTCTG AACAACGAGA TTGTCCCGGA TATTCAAATG 
AGGAACAAGG CCCAATAGTC CGATCAAAGT GGGCTATTCG TATCGCTTAC 
GAGGCCTATA CGATGGTAAT TGAATTCACG CGCATTCATC AGCGCGTGAT 
TTGGAGTTGC TCAATTTCAG ATCGCACAGG CTCTGTTAAT CATCTCCTCC 
TCCGAAAGAC AGAGAAAGAG ACAAATCAAA TTCATTCATA TCAAAGAGAT 
AGAGAGAAAA TGTCCGGTGT GGCTATTCAT GCGAGTTCAT GGGGCGCGGC 
TCTGGTGAGA ATCTCCCCGT ACACTTTCTC CGCCATCGGA ATCGCCATCT 
CCATCGGCGT CTCTGTTCTT GGTGCTGCCT GGGGAATTTA CATTACCGGA 
AGTAGTTTGA TCGGTGCCGC CATTGAAGCT CCTCGAATCA CTTCCAAGAA 
TCTCATCAGT GTAATCTTCT GTGAAGCCGT GGCTATATAC GGTGTTATTG 
TGGCAATCAT ATTACAAACG AAGTTGGAGA GTGTACCATC ATCAAAGATG 
TATGATGCTG AGTCTCTAAG AGCTGGATAT GCAATCTTTG CTTCTGGAAT 
CATTGTTGGA TTCGCAAACC TTGTATGCGG GTTATGTGTA GGAATCATTG 
GAAGCAGTTG CGCATTGTCT GATGCTCAGA ACTCGACGCT CTTTGTTAAG 
ATTCTTGTGA TTGAGATCTT TGGGAGTGCT CTCGGGTTAT TTGGAGTTAT 
CGTTGGGATT ATTATGTCAG CTCAAGCTAC ATGGCCTACA AAATAGAGAT 
ATATAAACTG GTAACTTATG GACTTGTACT CTATAGTCTA TACATTCTAT 
GATCTATTTT TCAAAGTTCC G

Gene models with high sequence identity

AT2G25620.1 [+] show detail - DNA-binding protein phosphatase 1
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	ATPase, F0/V0 complex, subunit C	1.8e-16
HMMPfam	ATPase, F0/V0 complex, subunit C	1.5e-10
HMMPfam	Protein phosphatase 2C, N-terminal	9.2e-70
superfamily	ATPase, F0/V0 complex, subunit C	7e-18
superfamily	ATPase, F0/V0 complex, subunit C	1.7e-14
superfamily	Protein phosphatase 2C-related	1.3e-78
Gene3D	Protein phosphatase 2C-related	1.9e-74
PatternScan	Protein phosphatase 2C, manganese/magnesium aspartate binding site	0
FPrintScan	ATPase, V0 complex, proteolipid subunit C	8.7e-25
FPrintScan	ATPase, V0 complex, proteolipid subunit C	8.7e-25
FPrintScan	ATPase, V0 complex, proteolipid subunit C	8.7e-25
FPrintScan	ATPase, V0 complex, proteolipid subunit C	8.7e-25
HMMPanther	PROTEIN PHOSPHATASE 2C	4.1e-155
HMMPanther	Protein phosphatase 2C	4.1e-155
HMMPanther	VACUOLAR ATP SYNTHASE PROTEOLIPID SUBUNIT	4.3e-76
HMMSmart	Protein phosphatase 2C-related	2.8e-83

See the detailed result >

AT2G25620.1

Model type: Protein coding
Short Description: DNA-binding protein phosphatase 1
Curator Summary: Encodes DBP1, a member of the DBP factors (DNA-binding protein phosphatases) featuring sequence-specific DNA-binding and protein phosphatase activity. DBP1 is involved in plant-potyvirus interactions. Loss-of-function of DBP1 renders resistance to potyviruses.
Computational Description: DNA-binding protein phosphatase 1 (DBP1); FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: regulation of defense response to virus; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT2G33700.1); Has 7196 Blast hits to 7030 proteins in 671 species: Archae - 12; Bacteria - 774; Metazoa - 1729; Fungi - 719; Plants - 2627; Viruses - 7; Other Eukaryotes - 1328 (source: NCBI BLink).
Link: InterPro Scan - TAIR