F22215

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F22215

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F22215

Determination of introduced cDNA(s)

  • RAFL05-15-O22 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-15-O22 - Resource: pdz87496

    5 prime EST [+] show sequence

    Nucleotide sequence: RAFL05-15-O22 - 5 prime EST 
    GGGATCATTC ATAGCTGCGA CTATTCTCTG CTCTTTCTAC ATTTTCTCAT 
    TTTCTCTTGG GCTACTTTTC GACTACTAAC AAATCCAACG ATGAGGGGAT 
    AGGTGAACAA GCTCGTGTCC AGATCTCTCT CCATCTCCGG GAAATGGCAG 
    AACCAACAGC TTCGTCGTCT CAACATCCAC GAGTATCAGG GAGCTGAATT 
    GATGGGGAAA TATGGAGTTA ATGTGCCGAA AGGAGTAGCT GCTTCTTCGT 
    TGGAAGAAGT TAAAAAGGCT ATTCAAGATG TTTTCCCTAA TGAAAGCGAG 
    TTGGTTGTTA AGAGCCAGAT TTTGGCTGGT GGAAGAGGTC TTGGAACATT 
    CAAGAGTGGT CTTAAGGGTG GTGTTCACAT TGTTAAACGT GATGAGGCTG 
    AAGAGATTGC TGGAAAGATG CTAGGACAAG TACTTGTCAC CAAGCAAACT 
    GGTCCTCAAG GCAAAGTAGT TAGCAAGGTT TACTTGTGTG AGAAATTGTC 
    ACTCGTCAAT GAGATGTACT TTTCCATTAT TCTGGACCGT AAATCTGCTG 
    GACCGTTGAT CATTGCCTGT AAAAAGGGTG GTACCAGTAT TGAAGATCTT 
    GCTGAGAAGT TCCCTGACAT GATCATCAAG GTACCAATTG ATGTATTTGC 
    AGGAATCACT

    Gene models with high sequence identity

    1. AT2G20420.1 [+] show detail - ATP citrate lyase (ACL) family protein
      E-value: 0; Score: 99.85

    3 prime EST [+] show sequence

    Nucleotide sequence: RAFL05-15-O22 - 3 prime EST 
    GGTAAACTTG AAACCCTAGT ATCAACCATA TGAGTTGGTT AAATACAAAA 
    AGATATTGAG AATTCTGATT TGAATCTCTT TGGATGGATC ACACAAAAAA 
    AGGAGACCAG TTCATTATTG ATCTGTTTGA GGAAATGATA TCCGCAAGAA 
    AGTGTAAATT GGGCGTCAAC CACAAAACAA TTAACAAACC GGCTTTTGGT 
    ATATATAGAG AGATTAGTGA GCTAAAGCTT TAACCGCTTT CTCAGCTGCA 
    TCATCCAAAT CATCAGCTGT TATGAGTTTC ATTCCACTTT CCTTGAGGAT 
    TCTCTTTCCC TGCTCAACAT TCGTTCCTTC TAGACGAACC ACCACTGGCA 
    CTTTCAATGC GACCTCTTTT GCAGCGTTCA CGATTCCACT AGCAATCACA 
    TCACATTTCA TTATCCCACC AAATATGTTC ACCAAGATTG CTTTCACTTT 
    ATCGTCCGAT GTCAGTATCT TAAACGCTTC CACCACCTGG TGCTCAGAAG 
    CATTTCCACC AACGTCAAGG AAATTGGCGG GTGTTCCACC GTGTAATTTA 
    ATGATGTCCA TGGTTGCCAT GGCCAATCCA GCACCATTCA CCATGCAACC 
    AATCTCTCCA TCTAAACCGA TGTAGTTCA

    Gene models with high sequence identity

    1. AT2G20420.1 [+] show detail - ATP citrate lyase (ACL) family protein
      E-value: 0; Score: 100.00

    AT2G20420.1

    Model type
    Protein coding
    Short Description
    ATP citrate lyase (ACL) family protein
    Computational Description
    ATP citrate lyase (ACL) family protein; FUNCTIONS IN: succinate-CoA ligase (GDP-forming) activity, copper ion binding, ATP binding; INVOLVED IN: response to cadmium ion, metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Succinyl-CoA synthetase, beta subunit (InterPro:IPR005809), Succinyl-CoA synthetase, beta subunit, conserved site (InterPro:IPR017866), ATP-citrate lyase/succinyl-CoA ligase (InterPro:IPR005811), ATP-grasp fold (InterPro:IPR011761), ATP-grasp fold, subdomain 2 (InterPro:IPR013816), ATP-grasp fold, succinyl-CoA synthetase-type (InterPro:IPR013650), Succinyl-CoA synthetase-like (InterPro:IPR016102); BEST Arabidopsis thaliana protein match is: ATP-citrate lyase A-1 (TAIR:AT1G10670.4); Has 9337 Blast hits to 9333 proteins in 2108 species: Archae - 181; Bacteria - 4147; Metazoa - 466; Fungi - 228; Plants - 81; Viruses - 0; Other Eukaryotes - 4234 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR