F22301

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F22301

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F22301

Determination of introduced cDNA(s)

  • RAFL09-61-A11 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-61-A11 - Resource: pda09859

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-61-A11 - full reading 
    GACTCTATTC CCAGTCTCCC TCCTCCGTCG TCTCTCATCT TCCTTTTCAT 
    TCTTCGGTTA TTATAACGTA ATCAATTACA AGTTCCCTTA TCTCTTCTTT 
    TCTGGTTTCT CCCGCGCACG AACGCGCATT CCCTCGTCTT CGCTGCCTCC 
    CAATCTCAAT CTCAGACTTG AAATCAAATC ACGACTGTAA GTGGTTCTAT 
    CTACAGTAGC TAGCTATTTC ATCCTGTTGT GGACAATAGA TAGATAGAAT 
    TCATCCCTGA AGACAAGGAG GATATGATGG ATAATGAAGT GCTCGACTTC 
    GATATTGGTG TAGGAGTTAG TAGTGGCGGA GATGTTGATG ACGACGCTAT 
    TGATATTGAG CACCATGCTC TCGACGACGA TGATATGCTC GACAGCCCAA 
    TTATGCCTTG CGGTAATGGT CTTGTTGGCA ATTCTGGAAA TTACTTTCCC 
    AACCAGGAGG AGGAGGCTTG TGATCTCCTG GATCTCGAGC CCTATGATGG 
    TCTTGAATTC GAGTCCGAAG AAGCTGCCAA GGCATTCTAC AACTCGTATG 
    CCCGTCGCAT TGGCTTTAGT ACCCGTGTCA GTTCCTCCCG CCGCTCCCGC 
    CGTGATGGAG CTATCATCCA GAGGCAATTT GTCTGTGCCA AAGAAGGTTT 
    CAGAAATATG AATGAAAAGC GCACCAAGGA CAGGGAGATC AAGCGTCCCA 
    GGACCATCAC TCGAGTCGGT TGCAAAGCCT CCCTCTCTGT TAAGATGCAG 
    GATTCCGGTA AATGGCTTGT CTCTGGCTTT GTCAAAGACC ACAACCATGA 
    GCTTGTTCCT CCCGACCAAG TTCACTGTCT GCGTTCCCAC AGGCAAATCT 
    CTGGCCCTGC CAAGACTTTG ATTGACACAC TTCAAGCTGC AGGAATGGGT 
    CCCCGCAGAA TCATGTCCGC CCTCATCAAA GAGTATGGTG GCATCAGCAA 
    GGTTGGTTTC ACCGAAGTGG ACTGTAGGAA TTATATGAGG AACAACCGCC 
    AGAAGAGCAT AGAAGGAGAG ATTCAGCTTC TTCTTGACTA CTTGAGGCAG 
    ATGAATGCTG ACAACCCAAA CTTCTTTTAT TCTGTTCAGG GAAGCGAAGA 
    TCAGTCTGTT GGTAATGTCT TCTGGGCTGA TCCTAAAGCT ATAATGGATT 
    TCACTCACTT TGGAGACACC GTTACATTTG ATACAACCTA CAGGTCCAAC 
    AGGTACCGTT TGCCTTTCGC ACCCTTCACT GGTGTAAATC ACCATGGCCA 
    ACCCATTCTT TTCGGCTGTG CCTTTATCAT CAATGAAACT GAGGCTTCAT 
    TTGTATGGCT TTTCAATACG TGGCTAGCCG CAATGTCCGC CCACCCTCCT 
    GTCTCAATCA CCACCGATCA TGATGCTGTT ATACGTGCAG CCATCATGCA 
    CGTTTTTCCT GGTGCCCGCC ATCGCTTTTG CAAATGGCAT ATTTTAAAGA 
    AATGTCAGGA GAAGCTGTCG CATGTCTTCC TCAAGCATCC TTCGTTTGAG 
    TCAGATTTCC ACAAATGTGT CAATCTGACA GAGTCGGTTG AGGATTTTGA 
    GAGATGCTGG TTTTCACTTC TTGACAAGTA TGAGCTAAGA GATCATGAGT 
    GGCTACAAGC AATATACTCC GATCGCCGGC AGTGGGTCCC AGTATATCTC 
    CGTGATACCT TTTTTGCCGA CATGTCCTTA ACTCATCGTA GTGATAGTAT 
    CAATTCATAT TTTGATGGTT ATATAAACGC TTCAACCAAT CTAAGCCAGT 
    TCTTTAAGCT GTATGAAAAA GCTTTGGAGA GTCGTCTCGA GAAAGAAGTT 
    AAAGCAGATT ATGACACAAT GAACTCACCT CCTGTTCTGA AGACTCCATC 
    TCCAATGGAG AAGCAGGCGT CTGAACTTTA CACAAGGAAG TTGTTTATGA 
    GATTTCAGGA AGAACTAGTT GGAACCCTGA CTTTCATGGC ATCCAAAGCT 
    GACGATGATG GGGATCTTGT TACCTACCAG GTTGCGAAAT ATGGAGAGGC 
    TCACAAGGCT CATTTCGTTA AGTTCAACGT TTTGGAGATG AGAGCAAATT 
    GCAGTTGCCA GATGTTTGAG TTCTCTGGCA TCATTTGCAG ACATATATTG 
    GCAGTCTTCC GGGTCACCAA TCTCCTTACA CTTCCACCTT ACTACATCCT 
    AAAAAGATGG ACCAGAAATG CCAAAAGCAG TGTTATATTT GATGATTATA 
    ATTTGCATGC GTATGCTAAT TACCTGGAGT CTCATACCGT CCGATACAAC 
    ACCTTACGTC ACAAAGCTTC TAATTTTGTG CAAGAAGCTG GAAAATCTCT 
    GTATACTTGT GATGTCGCAG TTGTTGCTCT GCAAGAAGCT GCCAAGACTG 
    TGTCCCTGGC AATGAATAAG GAAGTTAGAA GAACTATGGC GAACAGGCAT 
    TTTAAAGCGA GTTCTGTAAC TGGTGGAAAA CATCAGCAAG AAGTGCTGGC 
    GCAACCTGAG CCCGAGGACG AAATGGACAA GAAGATTAAT CAGCTCAGAA 
    ACGAGCTGGA ATTAGCAAAC AGGAAATGCG AAGCTTACAG GACTAACCTA 
    CTTTCAGTTT TGAAAGAAAT GGAAGACCAA AAGTTACAAG TGTCCATCAA 
    AGTGCAGAAC ATCAAAATTA GCTTGAAGGA TAATCTGTGA AACAAGCAAC 
    AAATTCCGAC TGCTATTCTC ATCTATAACA TATTGCTCAT GTACTATATC 
    TCTTATAGGG TTTTTGAAAG AGGGACCCAA TTTTCAGGAT TTCCCTGTTC 
    TTACAGTAGG TAGCCTTTGT AATAGATTGT ACTCCCAATC ATTTCCTTAC 
    TGAGTAAGAG CATGAAGTTG ATTCCCAT

    Gene models with high sequence identity

    1. AT4G38180.1 [+] show detail - FAR1-related sequence 5
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Zinc finger, SWIM-type 10.608
    HMMPfam Transcription factor, FAR1-related 7.6e-29
    HMMPfam MULE transposase, conserved domain 7.5e-23
    HMMPfam Zinc finger, SWIM-type 4.8e-12
    HMMSmart Zinc finger, PMZ-type 2.7e-08
    Coil coiled-coil 0

    See the detailed result >

    AT4G38180.1

    Model type
    Protein coding
    Short Description
    FAR1-related sequence 5
    Computational Description
    FAR1-related sequence 5 (FRS5); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to red or far red light; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: MULE transposase, conserved domain (InterPro:IPR018289), Transcription factor, FAR1-related (InterPro:IPR004330), Zinc finger, PMZ-type (InterPro:IPR006564), Zinc finger, SWIM-type (InterPro:IPR007527); BEST Arabidopsis thaliana protein match is: FAR1-related sequence 3 (TAIR:AT2G27110.2); Has 1793 Blast hits to 1580 proteins in 47 species: Archae - 2; Bacteria - 0; Metazoa - 4; Fungi - 136; Plants - 1646; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR