F22310

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F22310

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F22310

Determination of introduced cDNA(s)

RAFL05-07-M20 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-07-M20 - Resource: pda01021

full reading [+] show sequence

ATCGCCGAGT CTGCTTCTTC TTCTCTCTCT CTCTCTCTAG TGGTCACACT 
CACTTCACAC CCGTGAAAAA ACCCTAGGAA CCAAATATGG TGAACCTCTC 
GAGATCCGTC GCGTTGATCT CTGTATTCCT CCTTCCTTTA CTTAGCTTCT 
CTTTCTCCGT CGATAATCCG ACGGATCGGC GTGTTCTTGT TCTTCTCGAT 
GATTTATCAC TCAAATCCTC TCATTCTATC TTCTTCAACA CTCTCAAGTC 
TCGTGGATTC GATCTCGATT TCAAGTTAGC TGAAGATTCG AAGCTTGCGC 
TTCAACGATA CGGCCAGTAC TTGTACGATG GGTTGATCAT CTTCGCCCCA 
TCAACAGAAC GGTTTGGAGG ATCCTTGGAT TCGAAATCCA TTGCTGATTT 
TGTTGATTCC GGTCGTGACT TGATCTTATC GGCGGATACT GCTGCATCTG 
ATTTGATTAG GGGTATTGCC ACAGAGTGTG GGGTTGATTT CGATGAGGAT 
TCTTCAGCTA TGGTTATTGA TCATACTAGC TTCTCCGTCT CTGATGTTGA 
CGGCGACCAC ACCTTGATTG CTGCCGACGA TTTAGTGAAA TCCGATGTCA 
TTTTGGGAAA AACCAAGATT GAGGCTCCCG TGCTCTTCAG AGGAGTTGCA 
CATTCGTTGA ACCCTACTAA CAATCTGGTT TTGAAAGTTC TTTCAGCCTC 
TCCATCAGCT TATTCTGCTA ACCCAAGCTC GAAGTTGTCT AGTCCCCCCC 
AGCTCACTGG GTCTTCAATT TCGCTAGTCT CGGTCATGCA GGCCAGGAAC 
AATGCTAGGG TTGTGATCTC AGGCTCAGTG CAGTTGTTTA GCGATAGGTT 
AATCAGATCT GGTGTCCAGA AAGCAGGGAG TCCGAACCAA TACGAAAAAT 
CTGGCAACGA ACAGTTTGTG ACTGAACTAA GCAAATGGGT CTTCCACGAA 
AGGGGCCATC TGAAGGCTGG TAATCTTGTA CACCATAGGG TTGGAGAAAC 
AGATGAGCCA GCTATATATA GGATAAAGGA TGACCTGGAA TTTTCTGTAG 
AGATATATGA GTGGTCAGGA AAGAGCTGGG AGCCGTATGT TGCTAACGGT 
GTGCAGGTTC AGTTTTACAT GATGAGCCCG TATGTGTTGA AAACCCTGTC 
AACAGACAAG AAGGGTCTGT TTCATACATC TTTCAAGGTT CCTGATGTCT 
ACGGTGTATT CCAGTTTAAG GTTGAATATG AAAAGCTAGG CTACACTACA 
TTATCTCTTT CGAAGCAGAT TCCGGTGCGG CCTTACAGAC ACAATGAGTA 
TGAGAGATTT ATCCCAACTG CGTATCCTTA TTATGGAGCC TGCTTTACGA 
CGATGGCTGG TTTCTTCGTC TTCAGCTTCG TCTACCTCTA CCATAAGTAG 
AATCCCTTAA ATGGTGGCCA AGTCCCATAA AGTAAGCCAA ACCTCCATAT 
TTAGATGAGA AAAAACAACT TTCGAACTAG AGACCAATAT TTTTGGGCAG 
CAAGGTTTTC ATATGTTTCT AGTTTTAGCC AAACAGTTGC AACCTTCTTT 
TTGTTTCCCA GATATTTCTA TGTTAACGTA ACTTTACACC CCAAAAAAAA 
AAAAAAAA

Gene models with high sequence identity

AT5G66680.1 [+] show detail - dolichyl-diphosphooligosaccharide-protein glycosyltransferase 48kDa subunit family protein
E-value: 0; Score: 99.94

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Dolichyl-diphosphooligosaccharide-protein glycosyltransferase 48kDa subunit	8.5e-131
HMMPanther	Dolichyl-diphosphooligosaccharide-protein glycosyltransferase 48kDa subunit	3.4e-237

See the detailed result >

AT5G66680.1

Model type: Protein coding
Short Description: dolichyl-diphosphooligosaccharide-protein glycosyltransferase 48kDa subunit family protein
Curator Summary: Encodes a protein ortholog of human SOT48 or yeast WBP1, an essential protein subunit of the oligosaccharyltransferase (OST) complex, which is responsible for the transfer in the ER of the N-linked glycan precursor onto Asn residues of candidate proteins.
Computational Description: DEFECTIVE GLYCOSYLATION (DGL1); FUNCTIONS IN: dolichyl-diphosphooligosaccharide-protein glycotransferase activity; INVOLVED IN: plant-type cell wall organization, protein amino acid N-linked glycosylation via asparagine, unidimensional cell growth; LOCATED IN: in 8 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Dolichyl-diphosphooligosaccharide-protein glycosyltransferase 48kDa subunit (InterPro:IPR005013); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR