F22343

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F22343

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F22343

Determination of introduced cDNA(s)

RAFL09-48-F10 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-48-F10 - Resource: pda06382

full reading [+] show sequence

GCATAATCGG AGAAATCTCT CTGCCGCCAT ATTCAAAGCA GTTTCCACAC 
ATTTAATGTG AACACGTTTT CTCACTACCA ACAAAAAAAA ACTCAAATCG 
GAAAAAAAAA TGTCGGTTCA CGGACGATTT CCGGCGAGTC CACCGATTTC 
ATTATCTCCG TCGTCTTCTT CCACATCTCC GTCTTCACAG TCACCGTCAA 
CACCACCTGA TCTAAAGCAA CGAGTCATCG CTTGTCTCAA CAAGCTCGCT 
GATCGTGACA CTTTAGCTCT CGCTTCCGCT GAGCTTGACT CAATCGCTAG 
AAACCTTACT CACGATTCCT TCTCTCCGTT TCTTAACTGT ATCCACAACA 
CTGACTCTTC CGTTAAATCT CCGGTGAGGA AACAGTGCGT TGCTCTTTTA 
TCGGTTCTTT CTCGTTACCA CGGAGATTCT CTAACACCTC ACCTTGCTAA 
GATGGTTTCA ACTGTTATTC GCCGTCTCCG AGATCCGGAT TCCTCCGTTC 
GCTCTGCTTG CGCCGTCGCG ACGGCTGATA TGTCGGCTCA TGTTACGAGG 
CAGCCTTTTG CTTCCGTCGC GAAGCCGTTG ATTGAGACTT TGATTCAGGA 
AGGTGATTCG AATCTGCAGA TCGGAGCGGC GTTGTGTTTA GCGGCGTCTG 
TTGATGCGGC GACGGATCCG GAATCGGAGC AATTGAGAAA ATCGTTGCCT 
AAGATTGGGA AATTGCTTAA GAGTGATGGT TTTAAGGCTA AAGCTGCGTT 
GTTGAGTGCC GTCGGGAGTA TAATTACCGC CGGTGGTGCG GGAACTAAAC 
CGGTTTTGGA TTGGTTAGTT CCGGTTTTGA TTGAGTTTTT GAGCAGTGAG 
GATTGGGCGG CGAGGAAGTC TGCGGCTGAG GCGTTGGGTA AAGTTGCGAC 
GGCGGAAGAT TTGGCGTCGC AGTATAAGAA GACTTGCACG ACGGCTCTTG 
AGAGTAGAAG ATTTGATAAG GTGAAAAGTG TTAGAGAAAC TATGAATAGA 
GCATTGAATC TGTGGAAGGA AGTTTCAACT GATGATGAAG CTTCTTTATC 
TCCATCAAGA TCTTCAACAG ATGATGGTAA CATTGGATGC TTTTCCTCTG 
TCACGAGAAG TTCCACCATT GACGTTGGTT TAAAATCCGC TAGGCCAAAG 
AAAGTAACGC CTATAATGAA GAGGTCCCCA TCTTTGCCTG TGAATAGATC 
ATATGCAGCA ACTAGACAAA AAGAAAATCT TCCAAAAAGA AATCAAGGGA 
ATATGACCAT GTTAGTAGAA GAAGCCTCTA GTGTGGATAA CAAGGGACCA 
CATTTTACAC CGGTAAAGAA ATCTTCGGAA GAAACAGAAG AGAAGGCTAA 
CTCAGGGGGA CCAGATATAA TCAAACATAC TATCTCTGAG AAAAGCAGGG 
AAGATAGTAA AGTATCGAGC TTTGGTGGTT TGAGGTCTGG CTCAAGGGTT 
GCACCTTGTA GTGACGATGG TGATTCTGTA AAGAATTGTA AAGATGATGT 
TGAAGAGAGC AAGAAAGATA GTGAGGAACT GTCTTTGATA CGGGAACAGC 
TTGCTCTGAT TGAGAACCAA CAGTCTAGTC TCTTAGACTT ACTACAGAAA 
TTCATGGGAA CCTCACAGAG TGGAATTCAG TCTCTGGAGT CTCGTGTAAG 
CGGTCTAGAG ATGGCGTTGG ATGAAATATC GTGCGATCTG GCGGTTTCAA 
ACGGGAGAGT TCCTAGGAAT AGTAGTGGCT GCGCAGGAGA CAGTTGTTCC 
AAACTACCTG GTACAGAGTT CTTAAGTCCC AAGTTCTGGA GAAAAACCGA 
GGAGAGACCA CGGAACAGAA ACACAGCTAA TGAAATGGCT GCGTACGACC 
AGGGGATGCG AGAATCAACA GATACGAACA ACGGTCAAAG AGGAGGTTCA 
GTTTTTCAAA AGAGATCACG AAGAGACCAG TTCCAAGACT GTATGCATAC 
AACACTACAG AAACCAACCA CCAGATTATC TACTTGAAGC AAAAGTGAAA 
AGAGTGCACT TTTTGAGAAG AAAGTGATGT GATAATTGAA GCTGACCAGA 
CACTAACACA AGAAGCTGAA AATGAAAAGC CAAAAAATCC CTCAGATTTG 
ATGCTTTGCT TCAAACCGCT TGTTTGAATT TTCAAATCTC TCACACATGT 
ATTAGTAATT TAATCAGCGA GTGAAATAAT AGAGTTTC

Gene models with high sequence identity

AT1G27210.1 [+] show detail - ARM repeat superfamily protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
Gene3D	Armadillo-like helical	1.9e-09
Coil	coiled-coil	0
HMMPfam	HEAT	0.0012
ProfileScan	HEAT, type 2	8.859
superfamily	Armadillo-type fold	6.5e-31

See the detailed result >

AT1G27210.1

Model type: Protein coding
Short Description: ARM repeat superfamily protein
Computational Description: ARM repeat superfamily protein; FUNCTIONS IN: binding; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), HEAT, type 2 (InterPro:IPR021133), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G59850.1); Has 516 Blast hits to 439 proteins in 115 species: Archae - 2; Bacteria - 40; Metazoa - 93; Fungi - 74; Plants - 195; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink).
Link: InterPro Scan - TAIR