F22451

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F22451

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F22451

Determination of introduced cDNA(s)

  • RAFL05-01-I04 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-01-I04 - Resource: pda00700

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-01-I04 - full reading 
    TTCTTCCGTC AGGGCTCGTT TCGAGACTAT GATTAGGGCT GCTCAAGACA 
    GTGTTTGTGA TGCAATTGAA GCTATAGAAG GCGGTCCTAA GTTTAAAGAA 
    GATGTTTGGT CTCGACCTGG TGGTGGCGGT GGAATCAGTC GTGTGTTGCA 
    GGACGGGAAT GTCTTTGAGA AAGCTGGTGT TAATGTCTCT GTGGTTTATG 
    GTGTTATGCC TCCTGAAGCT TATAGAGCTG CAAAGGGCTC AGCTTCTGAT 
    CAGAAACCTG GTCCTGTTCC GTTCTTCGCT GCTGGAGTCA GCTCGGTTTT 
    GCATCCCAAG AACCCTTTTG CCCCAACCCT GCATTTCAAT TATCGCTATT 
    TCGAGACAGA TGCTCCAAAG GATGTTCCTG GAGCTCCAAG GCAATGGTGG 
    TTTGGTGGTG GCACTGATTT CACTCCTGCT TACATCTTTG AAGAAGATGT 
    CAAGCATTTC CATTCGATTC AAAAGCAAGC CTGTGACAAA TTTGACCCTT 
    CCTTCTATCC CCGATTCAAG AAGTGGTGTG ATGACTACTT TTACATCAAG 
    CACCGTGATG AGAGACGAGG ACTTGGAGGG ATATTTTTTG ATGATCTTAA 
    TGACTATGAT CAGGAAATGC TTCTGTCATT TGCCACTGAA TGCGCAAACT 
    CAGTGGTGCC GGCTTATATA CCTATAGTAG AGAAAAGGAA AGACATGGAA 
    TTTACAGAGC AGCACAAGGC ATGGCAACAG TTGCGACGAG GGCGATATGT 
    CGAATTCAAC TTGGTATATG ATCGGGGAAC GACATTTGGT CTGAAGACAG 
    GAGGACGAAT AGAGAGCATT CTCGTCTCTC TTCCGCTTTC AGCAAGATGG 
    GAATATGACC ATAAACCGGA AGAGGGGACC GAAGAGTGGA AGCTATTGGA 
    TGCTTGCATC AACCCGAAGG AGTGGATCTA GCCTGTGTTT CCCATTGTTG 
    TGAGAAGAGT GAGTTTATTT CCATTGTTTC ATGTAAGTTT TGAGCAGCTT 
    TAGAGGATTA GATAACTGGA GAGATGGAGA AAGAGAGTGT GTAAGGTCAG 
    GTCAAAATCT AGTCTTGTGA TGTGCATGTT AACATCATCT CCTTTCTCTC 
    TTTGCGATGG CAATGAAGAC AAACTAAGAG CAGTGTTGTT AAAAGTCAAA 
    ACTTACCAAT GCAAACAGTT GGTTTCTTGC AAT

    Gene models with high sequence identity

    1. AT1G03475.1 [+] show detail - Coproporphyrinogen III oxidase
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Coproporphyrinogen III oxidase 3.4e-137
    Gene3D Coproporphyrinogen III oxidase 2.1e-129
    HMMPfam Coproporphyrinogen III oxidase 2.9e-131
    HMMPIR Coproporphyrinogen III oxidase 1.8e-215
    FPrintScan Coproporphyrinogen III oxidase 3.4e-93
    FPrintScan Coproporphyrinogen III oxidase 3.4e-93
    FPrintScan Coproporphyrinogen III oxidase 3.4e-93
    FPrintScan Coproporphyrinogen III oxidase 3.4e-93
    FPrintScan Coproporphyrinogen III oxidase 3.4e-93
    FPrintScan Coproporphyrinogen III oxidase 3.4e-93
    FPrintScan Coproporphyrinogen III oxidase 3.4e-93
    PatternScan Coproporphyrinogen III oxidase, conserved site 0
    HMMPanther Coproporphyrinogen III oxidase 1.9e-104

    See the detailed result >

    AT1G03475.1

    Model type
    Protein coding
    Short Description
    Coproporphyrinogen III oxidase
    Curator Summary
    Encodes coproporphyrinogen III oxidase, a key enzyme in the biosynthetic pathway of chlorophyll and heme, a tetrapyrrole pathway. Mutants express cytological and molecular markers associated with the defense responses, usually activated by pathogen infection.
    Computational Description
    LESION INITIATION 2 (LIN2); FUNCTIONS IN: coproporphyrinogen oxidase activity; INVOLVED IN: tetrapyrrole biosynthetic process; LOCATED IN: apoplast, chloroplast stroma, chloroplast, plastid; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Coproporphyrinogen III oxidase (InterPro:IPR001260), Coproporphyrinogen III oxidase, conserved site (InterPro:IPR018375); BEST Arabidopsis thaliana protein match is: Coproporphyrinogen III oxidase (TAIR:AT4G03205.1); Has 4884 Blast hits to 4875 proteins in 1228 species: Archae - 0; Bacteria - 2144; Metazoa - 115; Fungi - 160; Plants - 86; Viruses - 0; Other Eukaryotes - 2379 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR